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The map label for this gene is yncC [H]

Identifier: 162148891

GI number: 162148891

Start: 3210367

End: 3211722

Strand: Direct

Name: yncC [H]

Synonym: GDI_3121

Alternate gene names: 162148891

Gene position: 3210367-3211722 (Clockwise)

Preceding gene: 162148889

Following gene: 162148892

Centisome position: 81.4

GC content: 68.88

Gene sequence:

>1356_bases
ATGCTGGTGGTCGTGGCGCTGGGCATCACCTGGGTTCTGGACGGGCTGGAGGTCACGGTCGTCGGCTCGGTGGCCCCGGT
CCTGCAGCGGGGGGACACGCTGGGCCTCTCGCCCGCAGGTATCGGCGGCGCGGCCTCGGCCTATGTCGCGGGCGCCGTCA
TCGGCGCGCTGCTGTTCGGCTGGGCGAGCGACCGGCTGGGCCGGCGGCAGATCTTCACCGTCACGCTGGGCCTGTACATC
CTGGGCGTGGGCATGACCGCGCTGTCGTGGAACCTGACCAGCTTCGCGCTGTTCCGCTTCGTGACCGGCATGGGCATCGG
CGGCGAGTATTCCGCCATCAATTCCGCCATCGACGAACTGATGCCCGCCCGGCTGCGCGGCCGGGTGGACCTGATCGTCA
ACGGCACGTTCTGGGCCGGGGCCGCGCTGGGCGCCGGGGCGTCGATGCTGCTGCTGCGCGGCAGCATCATGCCGGTCACC
ATAGGGTGGCGGGCCGTCTTCGCCATCGGCGCCCTGCTGGGCCTGACGGTCATCGCCCTGCGCCGCTGGATTCCGGAAAG
CCCGCGCTGGCTGATGACCCACCGCCGGATCGACGAAGCGACCCGCATCGTCACCATGATCGAAACCCGGCATTGCGGCG
TGCAGCGGGGTTCGGAAGTGCTGGACACCATCCAGATCTATCCCGCCGGCACGTTCGGCCTGCCGCAGGCTTTGCAGGTC
ATCATCGGGCCCTATCGCGGGCGGGCCGCCTACGTGCTGGTGCTGATGGTGGCGCAGGCCTTCCTGTACAATGCCGTCTT
CTTCACCTACGGGCTGGTCCTGACCCAGTACGACCATGTGCCCGACAGCACGGTGGGGATGTATATCCTGCCGCTGGCGA
TCGGCAACCTGCTGGGCCCGCTGGTCCTGGGGCGCTGGTTCGACACGGTGGGGCGACGGCGCATGATCGGCCTGACCTAC
CTTATCTCCGGGCTGATGATGGCCGGCGTGGCGGTGCTGTTCGCCAAGGGCATGCTGGATGCGTGGCTGCAGACGGCGGC
GTGGGTCGCGATCTTCTTCTTCGCCTCGGCCGCCGCCAGCGCGGCCTACCTGACGGCCAGCGAGATCTTCCCGCTGGAAA
TCCGTTCGCTGACCATCGCGCTGTTCTATGCCCTGGGCACGCTGTTCGGCGGCGTGGCGTCGCCGTTCCTGTTCGGATGG
CTGATCGGCCAGGGCAGCCTGCTGGCGCTCGCGGCGGGATATGCCGCGGCGGCGATCCTGATGATCATCGCGGCCGGCGT
CGCCATGCGCTGGGGGGTCGATGCGGAATGCCAGTCGCTGGAACGGATCGCCCCGCCCCTGTCCAGCATGCTGTAA

Upstream 100 bases:

>100_bases
GGCGGCTCCCCATCCCTCCTCCCGCTTTTCCCCCCATGCCGCGCCCATCGTCACCGATATCCCCGCGCGTCTGGACCGGC
TGCCCTGGTCGCGCTTCCAC

Downstream 100 bases:

>100_bases
CCCCGCGCCACGTGACGCGGGGGCGGTCCGGCGGTAAGGATTCGGTCATGACCGACACGCCCGAATCCCCGGCCGGATAT
CGCACGCTGGATGAAGCCGG

Product: sugar transporter

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 451; Mature: 451

Protein sequence:

>451_residues
MLVVVALGITWVLDGLEVTVVGSVAPVLQRGDTLGLSPAGIGGAASAYVAGAVIGALLFGWASDRLGRRQIFTVTLGLYI
LGVGMTALSWNLTSFALFRFVTGMGIGGEYSAINSAIDELMPARLRGRVDLIVNGTFWAGAALGAGASMLLLRGSIMPVT
IGWRAVFAIGALLGLTVIALRRWIPESPRWLMTHRRIDEATRIVTMIETRHCGVQRGSEVLDTIQIYPAGTFGLPQALQV
IIGPYRGRAAYVLVLMVAQAFLYNAVFFTYGLVLTQYDHVPDSTVGMYILPLAIGNLLGPLVLGRWFDTVGRRRMIGLTY
LISGLMMAGVAVLFAKGMLDAWLQTAAWVAIFFFASAAASAAYLTASEIFPLEIRSLTIALFYALGTLFGGVASPFLFGW
LIGQGSLLALAAGYAAAAILMIIAAGVAMRWGVDAECQSLERIAPPLSSML

Sequences:

>Translated_451_residues
MLVVVALGITWVLDGLEVTVVGSVAPVLQRGDTLGLSPAGIGGAASAYVAGAVIGALLFGWASDRLGRRQIFTVTLGLYI
LGVGMTALSWNLTSFALFRFVTGMGIGGEYSAINSAIDELMPARLRGRVDLIVNGTFWAGAALGAGASMLLLRGSIMPVT
IGWRAVFAIGALLGLTVIALRRWIPESPRWLMTHRRIDEATRIVTMIETRHCGVQRGSEVLDTIQIYPAGTFGLPQALQV
IIGPYRGRAAYVLVLMVAQAFLYNAVFFTYGLVLTQYDHVPDSTVGMYILPLAIGNLLGPLVLGRWFDTVGRRRMIGLTY
LISGLMMAGVAVLFAKGMLDAWLQTAAWVAIFFFASAAASAAYLTASEIFPLEIRSLTIALFYALGTLFGGVASPFLFGW
LIGQGSLLALAAGYAAAAILMIIAAGVAMRWGVDAECQSLERIAPPLSSML
>Mature_451_residues
MLVVVALGITWVLDGLEVTVVGSVAPVLQRGDTLGLSPAGIGGAASAYVAGAVIGALLFGWASDRLGRRQIFTVTLGLYI
LGVGMTALSWNLTSFALFRFVTGMGIGGEYSAINSAIDELMPARLRGRVDLIVNGTFWAGAALGAGASMLLLRGSIMPVT
IGWRAVFAIGALLGLTVIALRRWIPESPRWLMTHRRIDEATRIVTMIETRHCGVQRGSEVLDTIQIYPAGTFGLPQALQV
IIGPYRGRAAYVLVLMVAQAFLYNAVFFTYGLVLTQYDHVPDSTVGMYILPLAIGNLLGPLVLGRWFDTVGRRRMIGLTY
LISGLMMAGVAVLFAKGMLDAWLQTAAWVAIFFFASAAASAAYLTASEIFPLEIRSLTIALFYALGTLFGGVASPFLFGW
LIGQGSLLALAAGYAAAAILMIIAAGVAMRWGVDAECQSLERIAPPLSSML

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Probable) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the major facilitator superfamily. Sugar transporter (TC 2.A.1.1) family [H]

Homologues:

Organism=Homo sapiens, GI166197673, Length=391, Percent_Identity=24.2966751918159, Blast_Score=69, Evalue=1e-11,
Organism=Homo sapiens, GI11415038, Length=351, Percent_Identity=24.5014245014245, Blast_Score=69, Evalue=1e-11,
Organism=Homo sapiens, GI7662270, Length=304, Percent_Identity=25.9868421052632, Blast_Score=66, Evalue=5e-11,
Organism=Escherichia coli, GI1788074, Length=369, Percent_Identity=28.9972899728997, Blast_Score=81, Evalue=1e-16,
Organism=Escherichia coli, GI1786229, Length=384, Percent_Identity=23.1770833333333, Blast_Score=73, Evalue=4e-14,
Organism=Escherichia coli, GI87082159, Length=214, Percent_Identity=29.9065420560748, Blast_Score=69, Evalue=5e-13,
Organism=Escherichia coli, GI87082404, Length=165, Percent_Identity=26.0606060606061, Blast_Score=68, Evalue=1e-12,
Organism=Escherichia coli, GI87082231, Length=229, Percent_Identity=27.0742358078603, Blast_Score=65, Evalue=6e-12,
Organism=Escherichia coli, GI1789207, Length=398, Percent_Identity=23.6180904522613, Blast_Score=65, Evalue=9e-12,
Organism=Escherichia coli, GI1789312, Length=378, Percent_Identity=23.2804232804233, Blast_Score=63, Evalue=4e-11,
Organism=Escherichia coli, GI1790463, Length=205, Percent_Identity=24.8780487804878, Blast_Score=62, Evalue=8e-11,
Organism=Drosophila melanogaster, GI24648211, Length=367, Percent_Identity=22.6158038147139, Blast_Score=72, Evalue=5e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR020846
- InterPro:   IPR016196
- InterPro:   IPR005828
- InterPro:   IPR003663
- InterPro:   IPR005829 [H]

Pfam domain/function: PF00083 Sugar_tr [H]

EC number: NA

Molecular weight: Translated: 47963; Mature: 47963

Theoretical pI: Translated: 9.40; Mature: 9.40

Prosite motif: PS50850 MFS

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
3.8 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
3.8 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLVVVALGITWVLDGLEVTVVGSVAPVLQRGDTLGLSPAGIGGAASAYVAGAVIGALLFG
CEEEEEEHHHHHHCCCEEEEECHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHH
WASDRLGRRQIFTVTLGLYILGVGMTALSWNLTSFALFRFVTGMGIGGEYSAINSAIDEL
HHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHH
MPARLRGRVDLIVNGTFWAGAALGAGASMLLLRGSIMPVTIGWRAVFAIGALLGLTVIAL
HHHHHCCCEEEEEECCCHHHHHHCCCHHHHHHCCCCCEEEEHHHHHHHHHHHHHHHHHHH
RRWIPESPRWLMTHRRIDEATRIVTMIETRHCGVQRGSEVLDTIQIYPAGTFGLPQALQV
HHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHCCHHHHHHHEEECCCCCCHHHHHHH
IIGPYRGRAAYVLVLMVAQAFLYNAVFFTYGLVLTQYDHVPDSTVGMYILPLAIGNLLGP
HHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHH
LVLGRWFDTVGRRRMIGLTYLISGLMMAGVAVLFAKGMLDAWLQTAAWVAIFFFASAAAS
HHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AAYLTASEIFPLEIRSLTIALFYALGTLFGGVASPFLFGWLIGQGSLLALAAGYAAAAIL
HHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
MIIAAGVAMRWGVDAECQSLERIAPPLSSML
HHHHHHHHHHCCCCHHHHHHHHHCCCHHHCC
>Mature Secondary Structure
MLVVVALGITWVLDGLEVTVVGSVAPVLQRGDTLGLSPAGIGGAASAYVAGAVIGALLFG
CEEEEEEHHHHHHCCCEEEEECHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHH
WASDRLGRRQIFTVTLGLYILGVGMTALSWNLTSFALFRFVTGMGIGGEYSAINSAIDEL
HHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHH
MPARLRGRVDLIVNGTFWAGAALGAGASMLLLRGSIMPVTIGWRAVFAIGALLGLTVIAL
HHHHHCCCEEEEEECCCHHHHHHCCCHHHHHHCCCCCEEEEHHHHHHHHHHHHHHHHHHH
RRWIPESPRWLMTHRRIDEATRIVTMIETRHCGVQRGSEVLDTIQIYPAGTFGLPQALQV
HHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHCCHHHHHHHEEECCCCCCHHHHHHH
IIGPYRGRAAYVLVLMVAQAFLYNAVFFTYGLVLTQYDHVPDSTVGMYILPLAIGNLLGP
HHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHH
LVLGRWFDTVGRRRMIGLTYLISGLMMAGVAVLFAKGMLDAWLQTAAWVAIFFFASAAAS
HHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AAYLTASEIFPLEIRSLTIALFYALGTLFGGVASPFLFGWLIGQGSLLALAAGYAAAAIL
HHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
MIIAAGVAMRWGVDAECQSLERIAPPLSSML
HHHHHHHHHHCCCCHHHHHHHHHCCCHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]