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The map label for this gene is trbF [H]

Identifier: 162148680

GI number: 162148680

Start: 2992586

End: 2993278

Strand: Reverse

Name: trbF [H]

Synonym: GDI_2908

Alternate gene names: 162148680

Gene position: 2993278-2992586 (Counterclockwise)

Preceding gene: 162148681

Following gene: 162148679

Centisome position: 75.89

GC content: 66.38

Gene sequence:

>693_bases
ATGACCGCGATGTTCCGTCGCTCCACCACACGCTATGGCGACTCTCCAATCCCGGTGACGCCGTACCAGCAGGCGGCCCA
GCTCTGGGATGAGCGGATCGGGTCCGCCCGCGTCCAGGCCCGCAACTGGCGTTACATGGCCTTCGGCTCGCTGCTCCTGT
CCGCCGCCCTCGGCATGGCGCTGATCCAGCAGGCCGCCCGCGGCACCATCGTGCCCTGGGTGGTGCAGGTCGATCATCTG
GGGCAGGCCCAGGTGATCGGTCCCGCGACCGCCGCCTATGTTCCCACCGATCCGCAGGTGGCGTGGTATCTGGCGCGCTT
CATCGAGGATGTGCGCGGGCTTTCCGCCGACCCGGTCGTGGTCCGGCAGAACTGGCTGCGTGCCTACGACTTCACCATGA
TTCCCGGCGCGCAGGCGCTGAACGATTATGCCCGCCTGAACGATCCCTTCTCACGGATCGGCCATGAGCAGGTTGAGGTG
GATGTCTCGTCCGTGATCCGGGCCTCGCCGTCTAGCTTCCGTGTCGCCTGGACCGAACGGCATTACCGTGACGGCGCCTT
CACCGGCACCGAGCGCTGGACCGCCATTCTCACCGTCCTGATCGCCCCGCCGCACAACGCCGACCGCCTGCGGAAAAACC
CGCTCGGTATCTACGTCACCGCCATCAACTGGTCGAAGGAACTCGGACAATGA

Upstream 100 bases:

>100_bases
AACGTCGCAATGCCGCCGCCCATGCCGCCGAGGCAGCCCATGTCATCCGCGCGGCCGATGGCGGCGGCGGATCGTCCTCG
ATCGATCTCTCGGAAAAGGA

Downstream 100 bases:

>100_bases
TCCGGCTGCTCATGCGCGCCTTGCCGCTGGCGCTGCTCGCCCTGTCCGCCTGCACCGGCCGGTACCATCCGCCTGCCATC
CGTTATGACGACGCGGTGCG

Product: conjugal transfer protein TrbF

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 230; Mature: 229

Protein sequence:

>230_residues
MTAMFRRSTTRYGDSPIPVTPYQQAAQLWDERIGSARVQARNWRYMAFGSLLLSAALGMALIQQAARGTIVPWVVQVDHL
GQAQVIGPATAAYVPTDPQVAWYLARFIEDVRGLSADPVVVRQNWLRAYDFTMIPGAQALNDYARLNDPFSRIGHEQVEV
DVSSVIRASPSSFRVAWTERHYRDGAFTGTERWTAILTVLIAPPHNADRLRKNPLGIYVTAINWSKELGQ

Sequences:

>Translated_230_residues
MTAMFRRSTTRYGDSPIPVTPYQQAAQLWDERIGSARVQARNWRYMAFGSLLLSAALGMALIQQAARGTIVPWVVQVDHL
GQAQVIGPATAAYVPTDPQVAWYLARFIEDVRGLSADPVVVRQNWLRAYDFTMIPGAQALNDYARLNDPFSRIGHEQVEV
DVSSVIRASPSSFRVAWTERHYRDGAFTGTERWTAILTVLIAPPHNADRLRKNPLGIYVTAINWSKELGQ
>Mature_229_residues
TAMFRRSTTRYGDSPIPVTPYQQAAQLWDERIGSARVQARNWRYMAFGSLLLSAALGMALIQQAARGTIVPWVVQVDHLG
QAQVIGPATAAYVPTDPQVAWYLARFIEDVRGLSADPVVVRQNWLRAYDFTMIPGAQALNDYARLNDPFSRIGHEQVEVD
VSSVIRASPSSFRVAWTERHYRDGAFTGTERWTAILTVLIAPPHNADRLRKNPLGIYVTAINWSKELGQ

Specific function: Unknown

COG id: COG3701

COG function: function code U; Type IV secretory pathway, TrbF components

Gene ontology:

Cell location: Cell membrane; Single-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the trbF family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR007430 [H]

Pfam domain/function: PF04335 VirB8 [H]

EC number: NA

Molecular weight: Translated: 25770; Mature: 25638

Theoretical pI: Translated: 9.77; Mature: 9.77

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTAMFRRSTTRYGDSPIPVTPYQQAAQLWDERIGSARVQARNWRYMAFGSLLLSAALGMA
CCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCEEHHCCCCHHHHHHHHHHHHHHHH
LIQQAARGTIVPWVVQVDHLGQAQVIGPATAAYVPTDPQVAWYLARFIEDVRGLSADPVV
HHHHHHCCCEEEEEEEECCCCCEEEECCCCEEECCCCCHHHHHHHHHHHHHHCCCCCCCH
VRQNWLRAYDFTMIPGAQALNDYARLNDPFSRIGHEQVEVDVSSVIRASPSSFRVAWTER
HHHHHHHHHCEEECCCHHHHHHHHHCCCHHHHCCCHHEEEEHHHHHHCCCCCEEEEECHH
HYRDGAFTGTERWTAILTVLIAPPHNADRLRKNPLGIYVTAINWSKELGQ
HCCCCCCCCHHHHHHHEEEEEECCCCHHHHCCCCCEEEEEEEECHHHHCC
>Mature Secondary Structure 
TAMFRRSTTRYGDSPIPVTPYQQAAQLWDERIGSARVQARNWRYMAFGSLLLSAALGMA
CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCEEHHCCCCHHHHHHHHHHHHHHHH
LIQQAARGTIVPWVVQVDHLGQAQVIGPATAAYVPTDPQVAWYLARFIEDVRGLSADPVV
HHHHHHCCCEEEEEEEECCCCCEEEECCCCEEECCCCCHHHHHHHHHHHHHHCCCCCCCH
VRQNWLRAYDFTMIPGAQALNDYARLNDPFSRIGHEQVEVDVSSVIRASPSSFRVAWTER
HHHHHHHHHCEEECCCHHHHHHHHHCCCHHHHCCCHHEEEEHHHHHHCCCCCEEEEECHH
HYRDGAFTGTERWTAILTVLIAPPHNADRLRKNPLGIYVTAINWSKELGQ
HCCCCCCCCHHHHHHHEEEEEECCCCHHHHCCCCCEEEEEEEECHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8763954 [H]