Click here to switch to the map view.

The map label for this gene is traF

Identifier: 162148639

GI number: 162148639

Start: 2952815

End: 2953444

Strand: Reverse

Name: traF

Synonym: GDI_2866

Alternate gene names: NA

Gene position: 2953444-2952815 (Counterclockwise)

Preceding gene: 162148640

Following gene: 162148638

Centisome position: 74.88

GC content: 69.21

Gene sequence:

>630_bases
ATGACCCGCCGCGGCTGGTTCTTCACCACCTATTTCGCAGCGCTCACGACCCTGGCGACGACCGGTATCTCGCCCACGCC
GCACTGGGTGTGGAACGCGACCGCTAGTGTGCAGATCGGGCTGTACCGTGTGACACCGACGGCTGCTCTGCGCGTCGGCG
ACATCGTGGCGCTGCATCTGCCCGAACGCGACGCGACGCTGCTGGCGACGCGCGGCTATCTGCCCTTCGGCGTGCCGCTG
CTCAAGCCGGTCGCAGCACTCGCCGGTCAGGCCGTCTGTCGTGTCGGCCTGCGTGTCACCATCGACGGAAAGGTGGTCGG
AGAGGCCAAAGCCGTCGACCATCGGGGACGTCCGCTACCGGCGTGGCGGGGATGCCATCATCTCGCGTCGGGGCAGGTCT
TCGTCATGAACCCGGCGGTCCCGGCCAGTCTCGACGGACGCTATTTCGGTGTCCTCTCGGCCGACACCGTGATCGGTCGC
GCCACTCCGGTCTACCTGCGAAAGGGCGACGCCGAGCCGCCACCCCCGCATTTCGCAGCGCTTCCGGATCTGCCGGACCT
GCGACCACGGCCCCCCACCACGATGGTGCGTCCTGCGGTTCAGCGGCCGCCCGAGCCGCGGCGCGAGTGA

Upstream 100 bases:

>100_bases
ACTACTGGCGCGATCTCGACGCGCGTCTGCGGGCCAACCGGTCCGTGCCGCCTTATGGCCGCGCCCGCCATGAGGCGTGG
CTCTGGCGGAGGGCCACGTC

Downstream 100 bases:

>100_bases
CGTCGTGACGTCGCCAGACCTTTTCACAATCTCTGACACGAAAGCTCTCAACCCATGACCCAGATCGGTGTCTTCACGCG
CACGGCAAACGGCTTTGCCG

Product: conjugal transfer protein traF

Products: NA

Alternate protein names: Conjugal Transfer Protein TraF; TraF Peptidase; Conjugal Transfer TRAF Transmembrane Protein; Type IV Secretory Pathway Protease TraF-Like Protein; Peptidase; Plasmid Transfer Protein TraF; Type IV Secretory Pathway Protease TraF; Conjugative Transfer Signal Peptidase TraF; Peptidase S; Raf Peptidase. Serine Peptidase. Merops Family; Conjugal Transfer Protein Traf; Conjugal Transfer TraF Transmembrane Protein; Plasmid Transfer Protein Traf; Traf Peptidase Serine Peptidase Merops Family; Transmembrane Anchor Conjugal Transfer Protein; RaF Peptidase. Serine Peptidase. MEROPS Family; TraF Peptidase Serine Peptidase MEROPS Family

Number of amino acids: Translated: 209; Mature: 208

Protein sequence:

>209_residues
MTRRGWFFTTYFAALTTLATTGISPTPHWVWNATASVQIGLYRVTPTAALRVGDIVALHLPERDATLLATRGYLPFGVPL
LKPVAALAGQAVCRVGLRVTIDGKVVGEAKAVDHRGRPLPAWRGCHHLASGQVFVMNPAVPASLDGRYFGVLSADTVIGR
ATPVYLRKGDAEPPPPHFAALPDLPDLRPRPPTTMVRPAVQRPPEPRRE

Sequences:

>Translated_209_residues
MTRRGWFFTTYFAALTTLATTGISPTPHWVWNATASVQIGLYRVTPTAALRVGDIVALHLPERDATLLATRGYLPFGVPL
LKPVAALAGQAVCRVGLRVTIDGKVVGEAKAVDHRGRPLPAWRGCHHLASGQVFVMNPAVPASLDGRYFGVLSADTVIGR
ATPVYLRKGDAEPPPPHFAALPDLPDLRPRPPTTMVRPAVQRPPEPRRE
>Mature_208_residues
TRRGWFFTTYFAALTTLATTGISPTPHWVWNATASVQIGLYRVTPTAALRVGDIVALHLPERDATLLATRGYLPFGVPLL
KPVAALAGQAVCRVGLRVTIDGKVVGEAKAVDHRGRPLPAWRGCHHLASGQVFVMNPAVPASLDGRYFGVLSADTVIGRA
TPVYLRKGDAEPPPPHFAALPDLPDLRPRPPTTMVRPAVQRPPEPRRE

Specific function: Unknown

COG id: COG4959

COG function: function code OU; Type IV secretory pathway, protease TraF

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 22616; Mature: 22484

Theoretical pI: Translated: 10.90; Mature: 10.90

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTRRGWFFTTYFAALTTLATTGISPTPHWVWNATASVQIGLYRVTPTAALRVGDIVALHL
CCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEECCEEEEEEEEEECCHHHEEECCEEEEEE
PERDATLLATRGYLPFGVPLLKPVAALAGQAVCRVGLRVTIDGKVVGEAKAVDHRGRPLP
CCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEECCEEECCCHHHCCCCCCCC
AWRGCHHLASGQVFVMNPAVPASLDGRYFGVLSADTVIGRATPVYLRKGDAEPPPPHFAA
HHHHHHHHCCCCEEEECCCCCCCCCCEEEEEEECCEEECCCCEEEEECCCCCCCCCCEEC
LPDLPDLRPRPPTTMVRPAVQRPPEPRRE
CCCCCCCCCCCCCHHCCHHHHCCCCCCCC
>Mature Secondary Structure 
TRRGWFFTTYFAALTTLATTGISPTPHWVWNATASVQIGLYRVTPTAALRVGDIVALHL
CCCCCHHHHHHHHHHHHHHCCCCCCCCEEEECCEEEEEEEEEECCHHHEEECCEEEEEE
PERDATLLATRGYLPFGVPLLKPVAALAGQAVCRVGLRVTIDGKVVGEAKAVDHRGRPLP
CCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEECCEEECCCHHHCCCCCCCC
AWRGCHHLASGQVFVMNPAVPASLDGRYFGVLSADTVIGRATPVYLRKGDAEPPPPHFAA
HHHHHHHHCCCCEEEECCCCCCCCCCEEEEEEECCEEECCCCEEEEECCCCCCCCCCEEC
LPDLPDLRPRPPTTMVRPAVQRPPEPRRE
CCCCCCCCCCCCCHHCCHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA