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The map label for this gene is recD [H]

Identifier: 162148589

GI number: 162148589

Start: 2896416

End: 2898602

Strand: Reverse

Name: recD [H]

Synonym: GDI_2815

Alternate gene names: 162148589

Gene position: 2898602-2896416 (Counterclockwise)

Preceding gene: 162148590

Following gene: 162148588

Centisome position: 73.49

GC content: 64.43

Gene sequence:

>2187_bases
ATGAGCGGACGTGCCATCGACTCTTCGCCCACGGAAGCGCTGGCGGGACTGGTCGAGCGGGTGACGTTCCATAATGCCGA
GAACGGCTTCTGCGTTCTGCGGGTGAAGGTGCGGGGACAGCGCGATCTGGTCACCGTCGTCGGCCATGCCGCCATGATCT
CGGCAGGCGAGTTCGTGCAGATGTCGGGGCGCTGGTTCAACGACCACACCCACGGCCTCCAGTTCAAGGCCGAGTTTTTA
AAGGCCAGCCCGCCGACCACGGTCGAGGGCATCGAGCGCTATCTGGGCTCAGGCATGATCCGGGGCATCGGTCCGGTCTA
CGCCAAGAAACTGGTGAAAGCGTTCGGCGAGGCGGTGTTCGACCTGATCGAACAGGAACCGCACCGCCTGCGGGAGGTGA
CGGGTATCGGCCCCAAGCGTGCCGAACGGATTGTCGGTGGCTGGGCGGACCAGAAGGTGATCCGCGAGATCATGCTGTTC
CTGCACAGCAATGGTGTCGGCACCTCGCGGGCGGTGCGGATCTTCAAGACCTACGGACAGGACGCGGTCCAACTGATCAG
TGAGAACCCCTACCGGCTGGCGAAGGACATTCGGGGTATCGGGTTCAAGACCGCTGACCAGATCGCCCGGAAGATGGGGA
TCGCGCCCGACGCCATGATCCGGGTACGGGCCGGGATTTCCTATGCCCTTGGCGAGGCGATGGAAGAGGGGCATTGCGGT
CTGCCGGTCGGGGAGCTGCTGACCAGCACCGCCGAACTGCTGGAGGTCGCGGCACCCCTGATCGAGACGGCGCTCGCGCT
GGAACTGGAAGCAGGGGACGTGGTCGCCGACAGCGTGGGCGATACGGACTGCATTTTCCTGGCTGGTCTCTATCGCGCGG
AGCGGAGCATTGCGGAGCGATTGCGTGCCTGTGCCGTGGGTCGACCGCCCTGGCCCGAGATCGACGCTGCAAAAGCCATG
ACCTGGGTCGAAGGCAAGACTGGGCTTGCGCTCGCGCCCAGCCAGCAGGAGGCGGTGCGCCTTGCCCTGCGCAGCAAGGT
GCTGGTGATCACGGGGGGGCCCGGTGTCGGCAAGACCACGCTGGTCAACGCCATCCTCAAGATCGTGACCGCCAAGGGCA
CGGACGTGCAGCTTTGTGCGCCGACGGGCCGCGCGGCGAAGCGCCTGTCGGAAAGCACCGGACTGGAAGGCAAGACCATC
CATCGACTGCTGGAGACGGATCCGGCGAATGGCAGTTTCAAACGGGACGACACCAACCCGCTGACCTGCGATCTGCTGGT
CGTGGACGAGGCCAGCATGGTGGACGTGCTGCTGATGCGCTCCCTGCTGCGCGCGTTGCCCGACAGTGCGGCGCTGCTGA
TCGTGGGGGACGTGGACCAGTTGCCGTCGGTCGGACCGGGGCAGGTGCTGGCGGATATCATCGGTTCAGATGCCGTGCCG
GTGGTGCGGCTGACCGAGGTGTTCCGCCAGGCGGCGCAGAGCCGGATTATCACCAATGCGCACCGGATCAACGAAGGGAA
GATGCCGGATCTGAGCGCGGAAGAGGGATCGGATTTCTATTTCGTGGAGGCGGCCGAGCCCGAGGCTGGGCTGCGCAAGT
TGCTGGCCGTGGTGAAGGACCGCATCCCGGCGCGGTTCGGGCTGGACACGGTTCGCGACGTGCAGGTGCTGTGCCCGATG
AACCGGGGCGGCCTTGGGGCGCGATCGCTGAATATCGAATTGCAGCAGGCGTTGAATCCGCCGGGCGAGGTGAAGGTCGA
GCGGTTCGGCTGGACCTATGGTCCCGGCGATAAGGTGATGCAGATCGCCAATGATTATGACCGGGACGTCTTCAACGGGG
ATCTCGGCGTTATCGACATGATCGATGTGGAAGAGGGCGAACTGACGGTCTTATTCGATGGACGGGAAGTCGTTTATGGC
TTTGGGGAACTGGATGAACTGGTGCTCGCCTATGCCACCACGATCCACAAGAGCCAGGGATCCGAATATCCGGCCGTGGT
GATCCCGCTGGTGACCCAACATTACGCCATGCTGGCGCGGAACCTGCTCTATACCGGCGTCACACGGGGACGGAAGCTCG
TCGTGCTCGTGGGCCAGAAGAAGGCGCTGGCAATCGCTGTGCGCAATCAGGGCGGGCGGCGGCGGTGGTCGAAGCTCAGG
GAGTGGCTGGCCGGTAGCGTTGCATGA

Upstream 100 bases:

>100_bases
GGCTACAGGCGCGTCGTACAAATACTGGCTTACGGCGGCGTCACGGAAGGGGAGGGCGAGTCATGAACGATACGGGAGTG
CCGCTCCTCCGGCAGGCCGG

Downstream 100 bases:

>100_bases
TGGAGTGGCGGGGGTGACGGATGTGTCTCCATGTCGGCTTCCGCCTCTTTTGAGACGATACGAGCCGCTTTAATTGATTC
TTGAAAGCGGACATCGATGT

Product: exodeoxyribonuclease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 728; Mature: 727

Protein sequence:

>728_residues
MSGRAIDSSPTEALAGLVERVTFHNAENGFCVLRVKVRGQRDLVTVVGHAAMISAGEFVQMSGRWFNDHTHGLQFKAEFL
KASPPTTVEGIERYLGSGMIRGIGPVYAKKLVKAFGEAVFDLIEQEPHRLREVTGIGPKRAERIVGGWADQKVIREIMLF
LHSNGVGTSRAVRIFKTYGQDAVQLISENPYRLAKDIRGIGFKTADQIARKMGIAPDAMIRVRAGISYALGEAMEEGHCG
LPVGELLTSTAELLEVAAPLIETALALELEAGDVVADSVGDTDCIFLAGLYRAERSIAERLRACAVGRPPWPEIDAAKAM
TWVEGKTGLALAPSQQEAVRLALRSKVLVITGGPGVGKTTLVNAILKIVTAKGTDVQLCAPTGRAAKRLSESTGLEGKTI
HRLLETDPANGSFKRDDTNPLTCDLLVVDEASMVDVLLMRSLLRALPDSAALLIVGDVDQLPSVGPGQVLADIIGSDAVP
VVRLTEVFRQAAQSRIITNAHRINEGKMPDLSAEEGSDFYFVEAAEPEAGLRKLLAVVKDRIPARFGLDTVRDVQVLCPM
NRGGLGARSLNIELQQALNPPGEVKVERFGWTYGPGDKVMQIANDYDRDVFNGDLGVIDMIDVEEGELTVLFDGREVVYG
FGELDELVLAYATTIHKSQGSEYPAVVIPLVTQHYAMLARNLLYTGVTRGRKLVVLVGQKKALAIAVRNQGGRRRWSKLR
EWLAGSVA

Sequences:

>Translated_728_residues
MSGRAIDSSPTEALAGLVERVTFHNAENGFCVLRVKVRGQRDLVTVVGHAAMISAGEFVQMSGRWFNDHTHGLQFKAEFL
KASPPTTVEGIERYLGSGMIRGIGPVYAKKLVKAFGEAVFDLIEQEPHRLREVTGIGPKRAERIVGGWADQKVIREIMLF
LHSNGVGTSRAVRIFKTYGQDAVQLISENPYRLAKDIRGIGFKTADQIARKMGIAPDAMIRVRAGISYALGEAMEEGHCG
LPVGELLTSTAELLEVAAPLIETALALELEAGDVVADSVGDTDCIFLAGLYRAERSIAERLRACAVGRPPWPEIDAAKAM
TWVEGKTGLALAPSQQEAVRLALRSKVLVITGGPGVGKTTLVNAILKIVTAKGTDVQLCAPTGRAAKRLSESTGLEGKTI
HRLLETDPANGSFKRDDTNPLTCDLLVVDEASMVDVLLMRSLLRALPDSAALLIVGDVDQLPSVGPGQVLADIIGSDAVP
VVRLTEVFRQAAQSRIITNAHRINEGKMPDLSAEEGSDFYFVEAAEPEAGLRKLLAVVKDRIPARFGLDTVRDVQVLCPM
NRGGLGARSLNIELQQALNPPGEVKVERFGWTYGPGDKVMQIANDYDRDVFNGDLGVIDMIDVEEGELTVLFDGREVVYG
FGELDELVLAYATTIHKSQGSEYPAVVIPLVTQHYAMLARNLLYTGVTRGRKLVVLVGQKKALAIAVRNQGGRRRWSKLR
EWLAGSVA
>Mature_727_residues
SGRAIDSSPTEALAGLVERVTFHNAENGFCVLRVKVRGQRDLVTVVGHAAMISAGEFVQMSGRWFNDHTHGLQFKAEFLK
ASPPTTVEGIERYLGSGMIRGIGPVYAKKLVKAFGEAVFDLIEQEPHRLREVTGIGPKRAERIVGGWADQKVIREIMLFL
HSNGVGTSRAVRIFKTYGQDAVQLISENPYRLAKDIRGIGFKTADQIARKMGIAPDAMIRVRAGISYALGEAMEEGHCGL
PVGELLTSTAELLEVAAPLIETALALELEAGDVVADSVGDTDCIFLAGLYRAERSIAERLRACAVGRPPWPEIDAAKAMT
WVEGKTGLALAPSQQEAVRLALRSKVLVITGGPGVGKTTLVNAILKIVTAKGTDVQLCAPTGRAAKRLSESTGLEGKTIH
RLLETDPANGSFKRDDTNPLTCDLLVVDEASMVDVLLMRSLLRALPDSAALLIVGDVDQLPSVGPGQVLADIIGSDAVPV
VRLTEVFRQAAQSRIITNAHRINEGKMPDLSAEEGSDFYFVEAAEPEAGLRKLLAVVKDRIPARFGLDTVRDVQVLCPMN
RGGLGARSLNIELQQALNPPGEVKVERFGWTYGPGDKVMQIANDYDRDVFNGDLGVIDMIDVEEGELTVLFDGREVVYGF
GELDELVLAYATTIHKSQGSEYPAVVIPLVTQHYAMLARNLLYTGVTRGRKLVVLVGQKKALAIAVRNQGGRRRWSKLRE
WLAGSVA

Specific function: Exhibits Several Catalytic Activities, Including ATP-Dependent Exonuclease, ATP-Stimulated Endonuclease, ATP-Dependent Unwinding And DNA-Dependent ATPase Activities. Strand Cleavage Occurs 5' To 3' During The Unwinding Of Duplex DNA At Chi Sequences, Whi

COG id: COG0507

COG function: function code L; ATP-dependent exoDNAse (exonuclease V), alpha subunit - helicase superfamily I member

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1789182, Length=419, Percent_Identity=28.6396181384248, Blast_Score=144, Evalue=2e-35,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003593
- InterPro:   IPR006345 [H]

Pfam domain/function: NA

EC number: 3.1.11.5

Molecular weight: Translated: 78778; Mature: 78647

Theoretical pI: Translated: 6.60; Mature: 6.60

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSGRAIDSSPTEALAGLVERVTFHNAENGFCVLRVKVRGQRDLVTVVGHAAMISAGEFVQ
CCCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEEEEECCCCCHHHHHHHHHHHCCCCEEE
MSGRWFNDHTHGLQFKAEFLKASPPTTVEGIERYLGSGMIRGIGPVYAKKLVKAFGEAVF
ECCCEECCCCCCHHHHHHHHCCCCCCHHHHHHHHHCCCCHHCCCHHHHHHHHHHHHHHHH
DLIEQEPHRLREVTGIGPKRAERIVGGWADQKVIREIMLFLHSNGVGTSRAVRIFKTYGQ
HHHHCCHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCH
DAVQLISENPYRLAKDIRGIGFKTADQIARKMGIAPDAMIRVRAGISYALGEAMEEGHCG
HHHHHHCCCCHHHHHHHHCCCCCCHHHHHHHHCCCCHHHEEECCCCHHHHHHHHHCCCCC
LPVGELLTSTAELLEVAAPLIETALALELEAGDVVADSVGDTDCIFLAGLYRAERSIAER
CCHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCEEECCCCCCCHHHHHHHHHHHHHHHHH
LRACAVGRPPWPEIDAAKAMTWVEGKTGLALAPSQQEAVRLALRSKVLVITGGPGVGKTT
HHHHHCCCCCCCCCCHHHHEEEECCCCCEEECCCHHHHHHHHHHCCEEEEECCCCCCHHH
LVNAILKIVTAKGTDVQLCAPTGRAAKRLSESTGLEGKTIHRLLETDPANGSFKRDDTNP
HHHHHHHHHCCCCCCEEEECCCCHHHHHHHHHCCCCHHHHHHHHHCCCCCCCCCCCCCCC
LTCDLLVVDEASMVDVLLMRSLLRALPDSAALLIVGDVDQLPSVGPGQVLADIIGSDAVP
EEEEEEEECCHHHHHHHHHHHHHHHCCCCCEEEEEECHHHCCCCCCHHHHHHHHCCCCCH
VVRLTEVFRQAAQSRIITNAHRINEGKMPDLSAEEGSDFYFVEAAEPEAGLRKLLAVVKD
HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHH
RIPARFGLDTVRDVQVLCPMNRGGLGARSLNIELQQALNPPGEVKVERFGWTYGPGDKVM
CCCCCCCCCHHHCHHEEECCCCCCCCCEEECEEHHHHCCCCCCEEEEECCCEECCCHHHH
QIANDYDRDVFNGDLGVIDMIDVEEGELTVLFDGREVVYGFGELDELVLAYATTIHKSQG
HHHHHHCCHHCCCCCCEEEEEECCCCCEEEEECCCEEEECCCHHHHHHHHHHHHHHHCCC
SEYPAVVIPLVTQHYAMLARNLLYTGVTRGRKLVVLVGQKKALAIAVRNQGGRRRWSKLR
CCCCEEEEHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCEEEEEEECCCCHHHHHHHH
EWLAGSVA
HHHCCCCC
>Mature Secondary Structure 
SGRAIDSSPTEALAGLVERVTFHNAENGFCVLRVKVRGQRDLVTVVGHAAMISAGEFVQ
CCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEEEEECCCCCHHHHHHHHHHHCCCCEEE
MSGRWFNDHTHGLQFKAEFLKASPPTTVEGIERYLGSGMIRGIGPVYAKKLVKAFGEAVF
ECCCEECCCCCCHHHHHHHHCCCCCCHHHHHHHHHCCCCHHCCCHHHHHHHHHHHHHHHH
DLIEQEPHRLREVTGIGPKRAERIVGGWADQKVIREIMLFLHSNGVGTSRAVRIFKTYGQ
HHHHCCHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCH
DAVQLISENPYRLAKDIRGIGFKTADQIARKMGIAPDAMIRVRAGISYALGEAMEEGHCG
HHHHHHCCCCHHHHHHHHCCCCCCHHHHHHHHCCCCHHHEEECCCCHHHHHHHHHCCCCC
LPVGELLTSTAELLEVAAPLIETALALELEAGDVVADSVGDTDCIFLAGLYRAERSIAER
CCHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCEEECCCCCCCHHHHHHHHHHHHHHHHH
LRACAVGRPPWPEIDAAKAMTWVEGKTGLALAPSQQEAVRLALRSKVLVITGGPGVGKTT
HHHHHCCCCCCCCCCHHHHEEEECCCCCEEECCCHHHHHHHHHHCCEEEEECCCCCCHHH
LVNAILKIVTAKGTDVQLCAPTGRAAKRLSESTGLEGKTIHRLLETDPANGSFKRDDTNP
HHHHHHHHHCCCCCCEEEECCCCHHHHHHHHHCCCCHHHHHHHHHCCCCCCCCCCCCCCC
LTCDLLVVDEASMVDVLLMRSLLRALPDSAALLIVGDVDQLPSVGPGQVLADIIGSDAVP
EEEEEEEECCHHHHHHHHHHHHHHHCCCCCEEEEEECHHHCCCCCCHHHHHHHHCCCCCH
VVRLTEVFRQAAQSRIITNAHRINEGKMPDLSAEEGSDFYFVEAAEPEAGLRKLLAVVKD
HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHH
RIPARFGLDTVRDVQVLCPMNRGGLGARSLNIELQQALNPPGEVKVERFGWTYGPGDKVM
CCCCCCCCCHHHCHHEEECCCCCCCCCEEECEEHHHHCCCCCCEEEEECCCEECCCHHHH
QIANDYDRDVFNGDLGVIDMIDVEEGELTVLFDGREVVYGFGELDELVLAYATTIHKSQG
HHHHHHCCHHCCCCCCEEEEEECCCCCEEEEECCCEEEECCCHHHHHHHHHHHHHHHCCC
SEYPAVVIPLVTQHYAMLARNLLYTGVTRGRKLVVLVGQKKALAIAVRNQGGRRRWSKLR
CCCCEEEEHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCEEEEEEECCCCHHHHHHHH
EWLAGSVA
HHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: DNA-dependent ATPase activity; Phosphoric ester hydrolysis [C]

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]