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The map label for this gene is yubM [H]

Identifier: 162148587

GI number: 162148587

Start: 2891700

End: 2893832

Strand: Reverse

Name: yubM [H]

Synonym: GDI_2813

Alternate gene names: 162148587

Gene position: 2893832-2891700 (Counterclockwise)

Preceding gene: 162148588

Following gene: 162148586

Centisome position: 73.37

GC content: 62.12

Gene sequence:

>2133_bases
TTGAGAGGGTGGGAGAGAGTCTCCTGTCCGCCCGTCATGGAGTGTTTCGCCATGGCGACCGCCATTCCCAAAATCAGCCT
GAGTTCGTCCCGTGACATCCCGTTCAACCGACTGGTGCTGTCCCAGTCCAATGTCCGGCGTGTGAAGTCCGGCCTGTCAA
TCGAGGAACTGGCCTGCGACATTGAGCGCCGCGGGCTGCTGCAGAGCCTGAATGTCCGTCCCGTTCTCGACGATACCGGG
GCCGAGACCGGTACCTATGAGGTGCCTGCTGGCGGACGACGCTTCCGTGCCCTCGAACTGCTGGTGAAGCAGAAGAAACT
GGCGAAGACGGCACCCGTGCCGTGCGTCGTGCGCGAGCCCGGATCGGCCATTCTCGCCGAGGATGATTCCCTGGCCGAAA
ATGTCCAGCGCGTGGCCCTGCATCCGCTGGACCAGTTCCGCGCCTTCCGGGACATGCTGGAAAAAGGCATGTCCGAGGAG
GAAATCGCTGCCGCGTTCTTTGTCGCTCCGGCCGTGGTTAAACAGCGTCTGCGCCTCATGACCGTGTCCGACAAACTGCT
GGATATCTACGAGCAGGATGGCATTAAGCTGGAACAGTTGATGGCCTTTTCCATCAGTGATGACCATGCCCGTCAGGAAC
AGGTCTGGGGCATCGTGTCCCAGAGCCATAACCGTGAGCCCTATGTCATCCGCCGCATGCTGACAGAAAAGACCGTGCGG
GCCTCGGATCGTCGCGTGCGCTTTGTCGGGCTGGACACGTATCTCGCGGCCGGTGGGCCTATCATGCGCGACCTGTTTGA
GGCCGATGATGGCGGCTGGTTGCAGGATCCGGCCATTCTGGACCGGCTGGTCATGGAAAAGCTGCACACAGCCGCAGAGG
ATATCCGTGCCGAGGGCTGGAAATGGGTCGAAACCGCCCTGTCGTTCCCATGGGGTCACACACGGCAGTTCGTCGAGATC
GAGGGCACAGAATTACCTCTGACCGATGAAGAGACGGCCCGTCTCGAGGCCCTTCATACCGAGCAGGAAACTATCGAGGC
CGAATATGCGCAGGCGGATGAATATCCGGACGAGGTCGATGCACGGCTGGGCGAGATTGAGAGTGCCATTCTTGCTCTGG
AGGAACGACCTCTGGCGTTCGATCCCGCCGACATGGCGCGAGCCGGGGCTTTTATCAGTCTCGACAACGATGGCACGCTG
CAGGTCGAGCGGGGTTTCGTCCTGCCCGCGGATATGCCGGCTGAGCCGGAAGAGATCGATAACGCCGATAGTTCAGATGA
ATACGATCACTCCGCATATGATGGGCGGGATGAACGTCTTGCTGGTTCTGGCGGCGATACGGGCGGTGAGGGTGATACTA
CCGCTCCCGATGTTGAGCCCGAGGAAGAAGACGGGATCAAACCACTGCCTGACCGGCTTCTCGCCGAATTGACGGCCTGG
CGCACGCTGGCCCTGCGGGATGCTTTCGCCAGCAACCCGCACATTGCCCTGACCGAACTGCTGCACACATTGGTGCGGGA
TGTGTACTGGCAGACACCGGGGGCTGACTGCCTTGAAGCCTATGTCCGCGAAATCTCCCTGCCGGTCCATTCCCCCGACA
TGCCGGGCAGTGTGCCCGCCCACGCTCTGCGCCAGCGCAACGAGGGCTGGAAGCATGATCTGCCGGAAGACGAGGATGCA
TTGTGGCGCTGGATCGACGGGCTAGACGACGCCAGTCGCATGGCACTGCTGGCCCATTGCCTGTCCTTCGGGGTCAACGC
GCTCTACGAGCGCATGCCCGCCTATGGCGCGGTGTCCCAGCGCAGCGTCACCGAACGTCTCAAGCGTGCAGACCGTCTGG
CATCGGCCCTCAGCCTCGATATGGTCGAGGCGGGCTGGCAACCCACGGTCGAGAACTATCTCGGCCGGGTGACCAAGGCC
CGTATCCTCCAGGCCGTGCGCGAAGCACGCGGCGATGAGGTGGCAGAGCGCATCGCCCACCTGAAAAAACCCGACATGGC
GCGCGAGGCAGAGCGGTTGCTGGAGGGTTCGGGCTGGTTGCCCGAGGCGTTGCGGACCGTAGGGCTGGCCGATCAGGCAC
AGGTTGAAACAGTGACGGCAGGCGAGAATATGGAGGCCATTGCCGCCGAATAG

Upstream 100 bases:

>100_bases
ATCCCCCCATTGCCGTCGTTTCCTGCCGGGAAAAGGCTGCGGACTTTAGGCGGCTCTGGGGCCTTTAGAGTCAGAGAGTT
GCGCGGATTTTCGTGACGGG

Downstream 100 bases:

>100_bases
TGCAATGGATTTTTGGAATGGTGAGACAGCGGCTTCCGGTGCCCGGAAGCCGCTTTTTTCATGTCTGGCGCCCCGGAAAG
AGGGAGAGGTCGGCTTCGCC

Product: ParB-like nuclease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 710; Mature: 710

Protein sequence:

>710_residues
MRGWERVSCPPVMECFAMATAIPKISLSSSRDIPFNRLVLSQSNVRRVKSGLSIEELACDIERRGLLQSLNVRPVLDDTG
AETGTYEVPAGGRRFRALELLVKQKKLAKTAPVPCVVREPGSAILAEDDSLAENVQRVALHPLDQFRAFRDMLEKGMSEE
EIAAAFFVAPAVVKQRLRLMTVSDKLLDIYEQDGIKLEQLMAFSISDDHARQEQVWGIVSQSHNREPYVIRRMLTEKTVR
ASDRRVRFVGLDTYLAAGGPIMRDLFEADDGGWLQDPAILDRLVMEKLHTAAEDIRAEGWKWVETALSFPWGHTRQFVEI
EGTELPLTDEETARLEALHTEQETIEAEYAQADEYPDEVDARLGEIESAILALEERPLAFDPADMARAGAFISLDNDGTL
QVERGFVLPADMPAEPEEIDNADSSDEYDHSAYDGRDERLAGSGGDTGGEGDTTAPDVEPEEEDGIKPLPDRLLAELTAW
RTLALRDAFASNPHIALTELLHTLVRDVYWQTPGADCLEAYVREISLPVHSPDMPGSVPAHALRQRNEGWKHDLPEDEDA
LWRWIDGLDDASRMALLAHCLSFGVNALYERMPAYGAVSQRSVTERLKRADRLASALSLDMVEAGWQPTVENYLGRVTKA
RILQAVREARGDEVAERIAHLKKPDMAREAERLLEGSGWLPEALRTVGLADQAQVETVTAGENMEAIAAE

Sequences:

>Translated_710_residues
MRGWERVSCPPVMECFAMATAIPKISLSSSRDIPFNRLVLSQSNVRRVKSGLSIEELACDIERRGLLQSLNVRPVLDDTG
AETGTYEVPAGGRRFRALELLVKQKKLAKTAPVPCVVREPGSAILAEDDSLAENVQRVALHPLDQFRAFRDMLEKGMSEE
EIAAAFFVAPAVVKQRLRLMTVSDKLLDIYEQDGIKLEQLMAFSISDDHARQEQVWGIVSQSHNREPYVIRRMLTEKTVR
ASDRRVRFVGLDTYLAAGGPIMRDLFEADDGGWLQDPAILDRLVMEKLHTAAEDIRAEGWKWVETALSFPWGHTRQFVEI
EGTELPLTDEETARLEALHTEQETIEAEYAQADEYPDEVDARLGEIESAILALEERPLAFDPADMARAGAFISLDNDGTL
QVERGFVLPADMPAEPEEIDNADSSDEYDHSAYDGRDERLAGSGGDTGGEGDTTAPDVEPEEEDGIKPLPDRLLAELTAW
RTLALRDAFASNPHIALTELLHTLVRDVYWQTPGADCLEAYVREISLPVHSPDMPGSVPAHALRQRNEGWKHDLPEDEDA
LWRWIDGLDDASRMALLAHCLSFGVNALYERMPAYGAVSQRSVTERLKRADRLASALSLDMVEAGWQPTVENYLGRVTKA
RILQAVREARGDEVAERIAHLKKPDMAREAERLLEGSGWLPEALRTVGLADQAQVETVTAGENMEAIAAE
>Mature_710_residues
MRGWERVSCPPVMECFAMATAIPKISLSSSRDIPFNRLVLSQSNVRRVKSGLSIEELACDIERRGLLQSLNVRPVLDDTG
AETGTYEVPAGGRRFRALELLVKQKKLAKTAPVPCVVREPGSAILAEDDSLAENVQRVALHPLDQFRAFRDMLEKGMSEE
EIAAAFFVAPAVVKQRLRLMTVSDKLLDIYEQDGIKLEQLMAFSISDDHARQEQVWGIVSQSHNREPYVIRRMLTEKTVR
ASDRRVRFVGLDTYLAAGGPIMRDLFEADDGGWLQDPAILDRLVMEKLHTAAEDIRAEGWKWVETALSFPWGHTRQFVEI
EGTELPLTDEETARLEALHTEQETIEAEYAQADEYPDEVDARLGEIESAILALEERPLAFDPADMARAGAFISLDNDGTL
QVERGFVLPADMPAEPEEIDNADSSDEYDHSAYDGRDERLAGSGGDTGGEGDTTAPDVEPEEEDGIKPLPDRLLAELTAW
RTLALRDAFASNPHIALTELLHTLVRDVYWQTPGADCLEAYVREISLPVHSPDMPGSVPAHALRQRNEGWKHDLPEDEDA
LWRWIDGLDDASRMALLAHCLSFGVNALYERMPAYGAVSQRSVTERLKRADRLASALSLDMVEAGWQPTVENYLGRVTKA
RILQAVREARGDEVAERIAHLKKPDMAREAERLLEGSGWLPEALRTVGLADQAQVETVTAGENMEAIAAE

Specific function: Unknown

COG id: COG1475

COG function: function code K; Predicted transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the parB family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004437
- InterPro:   IPR003115 [H]

Pfam domain/function: PF02195 ParBc [H]

EC number: NA

Molecular weight: Translated: 79002; Mature: 79002

Theoretical pI: Translated: 4.40; Mature: 4.40

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRGWERVSCPPVMECFAMATAIPKISLSSSRDIPFNRLVLSQSNVRRVKSGLSIEELACD
CCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCHHHEEECHHHHHHHHHCCCHHHHHHH
IERRGLLQSLNVRPVLDDTGAETGTYEVPAGGRRFRALELLVKQKKLAKTAPVPCVVREP
HHHHHHHHHCCCCCCCCCCCCCCCCEECCCCCCHHHHHHHHHHHHHHHHCCCCCEEEECC
GSAILAEDDSLAENVQRVALHPLDQFRAFRDMLEKGMSEEEIAAAFFVAPAVVKQRLRLM
CCEEEECCHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH
TVSDKLLDIYEQDGIKLEQLMAFSISDDHARQEQVWGIVSQSHNREPYVIRRMLTEKTVR
HHHHHHHHHHHHCCCCHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH
ASDRRVRFVGLDTYLAAGGPIMRDLFEADDGGWLQDPAILDRLVMEKLHTAAEDIRAEGW
CCCCEEEEEECHHHHHCCCHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCH
KWVETALSFPWGHTRQFVEIEGTELPLTDEETARLEALHTEQETIEAEYAQADEYPDEVD
HHHHHHHCCCCCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHH
ARLGEIESAILALEERPLAFDPADMARAGAFISLDNDGTLQVERGFVLPADMPAEPEEID
HHHHHHHHHHHHHHCCCCCCCCHHHHHCCCEEEECCCCEEEEECCEEECCCCCCCHHHHC
NADSSDEYDHSAYDGRDERLAGSGGDTGGEGDTTAPDVEPEEEDGIKPLPDRLLAELTAW
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHH
RTLALRDAFASNPHIALTELLHTLVRDVYWQTPGADCLEAYVREISLPVHSPDMPGSVPA
HHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCCCCCCHH
HALRQRNEGWKHDLPEDEDALWRWIDGLDDASRMALLAHCLSFGVNALYERMPAYGAVSQ
HHHHHCCCCCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHH
RSVTERLKRADRLASALSLDMVEAGWQPTVENYLGRVTKARILQAVREARGDEVAERIAH
HHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHH
LKKPDMAREAERLLEGSGWLPEALRTVGLADQAQVETVTAGENMEAIAAE
CCCCCHHHHHHHHHCCCCCCHHHHHHHCCCCCHHEEEEECCCCCHHHCCC
>Mature Secondary Structure
MRGWERVSCPPVMECFAMATAIPKISLSSSRDIPFNRLVLSQSNVRRVKSGLSIEELACD
CCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCHHHEEECHHHHHHHHHCCCHHHHHHH
IERRGLLQSLNVRPVLDDTGAETGTYEVPAGGRRFRALELLVKQKKLAKTAPVPCVVREP
HHHHHHHHHCCCCCCCCCCCCCCCCEECCCCCCHHHHHHHHHHHHHHHHCCCCCEEEECC
GSAILAEDDSLAENVQRVALHPLDQFRAFRDMLEKGMSEEEIAAAFFVAPAVVKQRLRLM
CCEEEECCHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH
TVSDKLLDIYEQDGIKLEQLMAFSISDDHARQEQVWGIVSQSHNREPYVIRRMLTEKTVR
HHHHHHHHHHHHCCCCHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH
ASDRRVRFVGLDTYLAAGGPIMRDLFEADDGGWLQDPAILDRLVMEKLHTAAEDIRAEGW
CCCCEEEEEECHHHHHCCCHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCH
KWVETALSFPWGHTRQFVEIEGTELPLTDEETARLEALHTEQETIEAEYAQADEYPDEVD
HHHHHHHCCCCCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHH
ARLGEIESAILALEERPLAFDPADMARAGAFISLDNDGTLQVERGFVLPADMPAEPEEID
HHHHHHHHHHHHHHCCCCCCCCHHHHHCCCEEEECCCCEEEEECCEEECCCCCCCHHHHC
NADSSDEYDHSAYDGRDERLAGSGGDTGGEGDTTAPDVEPEEEDGIKPLPDRLLAELTAW
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHH
RTLALRDAFASNPHIALTELLHTLVRDVYWQTPGADCLEAYVREISLPVHSPDMPGSVPA
HHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCCCCCCHH
HALRQRNEGWKHDLPEDEDALWRWIDGLDDASRMALLAHCLSFGVNALYERMPAYGAVSQ
HHHHHCCCCCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHH
RSVTERLKRADRLASALSLDMVEAGWQPTVENYLGRVTKARILQAVREARGDEVAERIAH
HHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHH
LKKPDMAREAERLLEGSGWLPEALRTVGLADQAQVETVTAGENMEAIAAE
CCCCCHHHHHHHHHCCCCCCHHHHHHHCCCCCHHEEEEECCCCCHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9722640; 9628576 [H]