Click here to switch to the map view.

The map label for this gene is oprB [H]

Identifier: 162148421

GI number: 162148421

Start: 2734806

End: 2736191

Strand: Reverse

Name: oprB [H]

Synonym: GDI_2640

Alternate gene names: 162148421

Gene position: 2736191-2734806 (Counterclockwise)

Preceding gene: 162148427

Following gene: 162148409

Centisome position: 69.37

GC content: 61.4

Gene sequence:

>1386_bases
GTGTGTGCCGCGACCGGGGCCATGGCGCAGACCTCTCTCAATCCCAGCGTCCGGGTCGCGACCCCGCTGAACCAGGTCAA
TTTCGGTGCGACGTCGGTGCCCCCGCTGCCCCAGCCCGAGGCGCTGTGGCCGGACCCGTTCGGCTGGAATACGTGGCTTC
GCGATCGCGGCGTTGCGTTCCTTCTGGATAACGTCAACGAATTCGCGGGAAATGTCGGAAGCGTGACGCCCGGATACGGC
CTGCGCAAGGGCAGTTCCAACGCGGGCCAGTACGCATTCGAAAATGATACGGACTGGGAGCGCCTTGCGGGACTGACGGG
CTTCAGCACGCACGCGATCGTCGTCGGTCGTTACGGTATTCCGGCCAGCCGCATGTTCGGTGACAACGTGGCCCCCAGCC
AGGAAATCTATGGTGCCGGCGGCAACGTGGTCGTGCACTTTGTGTATGGATACGGGGAAGAGACGTTGTGGCAGGGCCGC
TTCGATGTCGCGGCCGGGCGCATTCCGTTCCTGAACGATTTCTCGTCCAACCCGCTGTACTGCAATTTCATGAACAATGC
GTTCTGCGGTAACCCCAAGGCGTCTTCCGACAACACCGCCCATTCGTCCTATCCGGATTCGAACTGGGCCGTCCGGTTCC
GGGTCCGTCCGACCACCGATACGTATTTCCAGACCGGCGTCTATTTCGACCAGGCCGGTATCTACGGCAATACGCAGTAT
CGCACCGGCTTCAAGCTCAACGGCGCCGATATCAACGGCGAATCGATGCCCATCGAATTCGGCTGGGAACCGGTCTTCGG
TCACGGGACGCTGCCCGGCCATTACAAGATCGGCTACGCACGCGATACGGTGGACCATCAGGACGTCTATTATGACGGCT
ATGGCGATGCCTGGGCGTTGACCGGCCTGCCGCGTCGGCGGGACCATGGTGCGAACGCCGCATGGTTCCTGGCCGACCAG
ATGCTGTATCATTTCAAGGGCGGGGCCAAGGATGCGGGCGTGACCTTCCTGGGCGGCTTCTATTACAACGACGAAGATAT
CTCGATGCGCTCGCAGCAGTACCAGGCCGGTTTCCTCGCCCGGGGATTCTGGAAGGCGCGGCCGCTCGATGGTGCCGGCA
TCAATTTTGCCTATATCCGTGAGTCGGCGCTGGCGGCCAAGACCCAGGAACTGCAACTGCAGCAGGGAATTCTGCCCGGC
AACCTGCTGAACGGGGCCTATGGCCCGCAATCCTACGGCATGAACCTGGAAGTGGACTATCAGATCCACGTCTATCGGGG
CATGACGATTGCCCCGGATTTCCAGTATTACTTCAATCCGGGTGGCCAGCGCGTGCTGCGTGACACCGCCGTGCTGGGGT
TCAAGACCCATATCGAACTGTTCTGA

Upstream 100 bases:

>100_bases
TCAGGCTCCAACAAGAAAACCAAGAACAATGAAGAAGACAATCTCTTTTTCCCGTACCGTGGCGTGTGGCGCCCTGCTGT
CCGTATGCACGGGTTTTGCC

Downstream 100 bases:

>100_bases
ACACCAGGCCGGGGCCGGAGCCGTCCTTCCCGCATGCGGGACGGGAACGGCTCCGGCCTTCGTCGTGACGGGGCCGGACC
GCCCCTGCGTTACAGGCCGG

Product: porin B

Products: NA

Alternate protein names: Glucose porin; Outer membrane protein D1 [H]

Number of amino acids: Translated: 461; Mature: 461

Protein sequence:

>461_residues
MCAATGAMAQTSLNPSVRVATPLNQVNFGATSVPPLPQPEALWPDPFGWNTWLRDRGVAFLLDNVNEFAGNVGSVTPGYG
LRKGSSNAGQYAFENDTDWERLAGLTGFSTHAIVVGRYGIPASRMFGDNVAPSQEIYGAGGNVVVHFVYGYGEETLWQGR
FDVAAGRIPFLNDFSSNPLYCNFMNNAFCGNPKASSDNTAHSSYPDSNWAVRFRVRPTTDTYFQTGVYFDQAGIYGNTQY
RTGFKLNGADINGESMPIEFGWEPVFGHGTLPGHYKIGYARDTVDHQDVYYDGYGDAWALTGLPRRRDHGANAAWFLADQ
MLYHFKGGAKDAGVTFLGGFYYNDEDISMRSQQYQAGFLARGFWKARPLDGAGINFAYIRESALAAKTQELQLQQGILPG
NLLNGAYGPQSYGMNLEVDYQIHVYRGMTIAPDFQYYFNPGGQRVLRDTAVLGFKTHIELF

Sequences:

>Translated_461_residues
MCAATGAMAQTSLNPSVRVATPLNQVNFGATSVPPLPQPEALWPDPFGWNTWLRDRGVAFLLDNVNEFAGNVGSVTPGYG
LRKGSSNAGQYAFENDTDWERLAGLTGFSTHAIVVGRYGIPASRMFGDNVAPSQEIYGAGGNVVVHFVYGYGEETLWQGR
FDVAAGRIPFLNDFSSNPLYCNFMNNAFCGNPKASSDNTAHSSYPDSNWAVRFRVRPTTDTYFQTGVYFDQAGIYGNTQY
RTGFKLNGADINGESMPIEFGWEPVFGHGTLPGHYKIGYARDTVDHQDVYYDGYGDAWALTGLPRRRDHGANAAWFLADQ
MLYHFKGGAKDAGVTFLGGFYYNDEDISMRSQQYQAGFLARGFWKARPLDGAGINFAYIRESALAAKTQELQLQQGILPG
NLLNGAYGPQSYGMNLEVDYQIHVYRGMTIAPDFQYYFNPGGQRVLRDTAVLGFKTHIELF
>Mature_461_residues
MCAATGAMAQTSLNPSVRVATPLNQVNFGATSVPPLPQPEALWPDPFGWNTWLRDRGVAFLLDNVNEFAGNVGSVTPGYG
LRKGSSNAGQYAFENDTDWERLAGLTGFSTHAIVVGRYGIPASRMFGDNVAPSQEIYGAGGNVVVHFVYGYGEETLWQGR
FDVAAGRIPFLNDFSSNPLYCNFMNNAFCGNPKASSDNTAHSSYPDSNWAVRFRVRPTTDTYFQTGVYFDQAGIYGNTQY
RTGFKLNGADINGESMPIEFGWEPVFGHGTLPGHYKIGYARDTVDHQDVYYDGYGDAWALTGLPRRRDHGANAAWFLADQ
MLYHFKGGAKDAGVTFLGGFYYNDEDISMRSQQYQAGFLARGFWKARPLDGAGINFAYIRESALAAKTQELQLQQGILPG
NLLNGAYGPQSYGMNLEVDYQIHVYRGMTIAPDFQYYFNPGGQRVLRDTAVLGFKTHIELF

Specific function: Substrate-selective channel for a variety of different sugars. Could potentially facilitate the diffusion of diverse compounds, dependent on the presence of a hydroxyl group, but is presumably restricted to carbohydrates. Involved in the transport of gluc

COG id: COG3659

COG function: function code M; Carbohydrate-selective porin

Gene ontology:

Cell location: Cell outer membrane; Multi-pass membrane protein [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the oprB family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR007049 [H]

Pfam domain/function: PF04966 OprB [H]

EC number: NA

Molecular weight: Translated: 50902; Mature: 50902

Theoretical pI: Translated: 5.79; Mature: 5.79

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MCAATGAMAQTSLNPSVRVATPLNQVNFGATSVPPLPQPEALWPDPFGWNTWLRDRGVAF
CCCCCCCHHCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCEEE
LLDNVNEFAGNVGSVTPGYGLRKGSSNAGQYAFENDTDWERLAGLTGFSTHAIVVGRYGI
EECCHHHHCCCCCCCCCCCCCCCCCCCCCCEEECCCCCHHHHHCCCCCCCEEEEEEECCC
PASRMFGDNVAPSQEIYGAGGNVVVHFVYGYGEETLWQGRFDVAAGRIPFLNDFSSNPLY
CHHHHCCCCCCCCHHHCCCCCCEEEEEEEECCCCCEECCCEEEECCCCCEECCCCCCCEE
CNFMNNAFCGNPKASSDNTAHSSYPDSNWAVRFRVRPTTDTYFQTGVYFDQAGIYGNTQY
EEECCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCEEECCEEEECCCCCCCCEE
RTGFKLNGADINGESMPIEFGWEPVFGHGTLPGHYKIGYARDTVDHQDVYYDGYGDAWAL
ECCEEECCCCCCCCCCEEEECCEEEECCCCCCCCEEEEEEECCCCCCCEEECCCCCEEEE
TGLPRRRDHGANAAWFLADQMLYHFKGGAKDAGVTFLGGFYYNDEDISMRSQQYQAGFLA
CCCCCCCCCCCCEEEEHHHHHHHHHCCCCCCCCEEEEEEEEECCCCCCHHHHHHHCCHHC
RGFWKARPLDGAGINFAYIRESALAAKTQELQLQQGILPGNLLNGAYGPQSYGMNLEVDY
CCCCCCCCCCCCCCEEEEEEHHHHHHHHHHHHHHHCCCCCHHCCCCCCCCCCCCEEEEEE
QIHVYRGMTIAPDFQYYFNPGGQRVLRDTAVLGFKTHIELF
EEEEEECCEECCCCEEEECCCCHHHHHHHEEEEEEEEEEEC
>Mature Secondary Structure
MCAATGAMAQTSLNPSVRVATPLNQVNFGATSVPPLPQPEALWPDPFGWNTWLRDRGVAF
CCCCCCCHHCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCEEE
LLDNVNEFAGNVGSVTPGYGLRKGSSNAGQYAFENDTDWERLAGLTGFSTHAIVVGRYGI
EECCHHHHCCCCCCCCCCCCCCCCCCCCCCEEECCCCCHHHHHCCCCCCCEEEEEEECCC
PASRMFGDNVAPSQEIYGAGGNVVVHFVYGYGEETLWQGRFDVAAGRIPFLNDFSSNPLY
CHHHHCCCCCCCCHHHCCCCCCEEEEEEEECCCCCEECCCEEEECCCCCEECCCCCCCEE
CNFMNNAFCGNPKASSDNTAHSSYPDSNWAVRFRVRPTTDTYFQTGVYFDQAGIYGNTQY
EEECCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCEEECCEEEECCCCCCCCEE
RTGFKLNGADINGESMPIEFGWEPVFGHGTLPGHYKIGYARDTVDHQDVYYDGYGDAWAL
ECCEEECCCCCCCCCCEEEECCEEEECCCCCCCCEEEEEEECCCCCCCEEECCCCCEEEE
TGLPRRRDHGANAAWFLADQMLYHFKGGAKDAGVTFLGGFYYNDEDISMRSQQYQAGFLA
CCCCCCCCCCCCEEEEHHHHHHHHHCCCCCCCCEEEEEEEEECCCCCCHHHHHHHCCHHC
RGFWKARPLDGAGINFAYIRESALAAKTQELQLQQGILPGNLLNGAYGPQSYGMNLEVDY
CCCCCCCCCCCCCCEEEEEEHHHHHHHHHHHHHHHCCCCCHHCCCCCCCCCCCCEEEEEE
QIHVYRGMTIAPDFQYYFNPGGQRVLRDTAVLGFKTHIELF
EEEEEECCEECCCCEEEECCCCHHHHHHHEEEEEEEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8125108; 10984043; 2450582; 8132494; 7768797 [H]