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The map label for this gene is rbsC [H]

Identifier: 162148412

GI number: 162148412

Start: 2724499

End: 2725461

Strand: Direct

Name: rbsC [H]

Synonym: GDI_2631

Alternate gene names: 162148412

Gene position: 2724499-2725461 (Clockwise)

Preceding gene: 162148411

Following gene: 162148413

Centisome position: 69.08

GC content: 65.21

Gene sequence:

>963_bases
ATGACGAGAACCATCACCGGCATGCTGAGATGGCGTGAACTGAGCGTCATTGTCGTGGCTGTCGTCCTGGCGGTCTATTT
CCAGATCGCCAACGCCAACTTCCTGTTTTCCAACGCCAGCCTGCAGAACCTGTCGCAGTTCATCGCCCCGGTCGCCATCA
TTGCCTGCGGCGAGGTGATGCTGATGATCGGGGGCGAGATCGATCTTTCGGCCGGCATGGTCTACGCCCTGGCCCCCTTC
GTGATGTATTTCCTGGCCCGGGCCGGCCTGCCCTATCCGCTGGCCATCGGGGGCGCGCTGCTGGGCGCGGCCACGATCGG
CGCGGTCAACGGCTTCGTGACCGTGATGCTGGGCGTGCCCTCCTTCGTCACCACGCTGGGCACGCTGTTCCTGCTGAACG
GGCTGACGCTGACGATTTCCAACGGCACGCCGGTCGATATCGAGGCCAGCCGCACGCTCTCCTTCCTGATGGGACGGGGT
GGCTATGCGGAATTCCTCTGGGCGGTGCTGGTCGTGCTGGTCATGCATTTCATGCTGCGCAACACGCGCTGGGGGCTGCA
TACGGTGGCGGCCGGGGCGAACCCCATCGGGGCCAGCGAGGCCGGCATTCGCATCCGGTCGCTGAAGATCGTCAACTTCG
TCCTGTGCGGCGCGCTGGCCGGCCTGACCGGGATTCTGGAAGCCTTCCGGATTTCGTCGATCGATCCCACGGCCGGGGGC
ACGCATATCATGTTCCTGGCCGTGGCGGCGGCGGTCATCGGGGGCACGCCGCTGGCCGGCGGGTCGGGCACCATCGCGGG
GGCGATGATCGGGGCCATGGTGCTGGGCATCCTCAATGACGGGTTCACCCTGATCGGGATCAACGCCTTTACCTTCGACC
TGATCCTGGGCGGGGCCATCCTGGTGGCCATGCTCTGCAATATCCTCATAGGCCGGTATCGGCGCGGGATCGCGGTATCA
TGA

Upstream 100 bases:

>100_bases
GTTCTTTCGACGTGCTCATCAGGCCGCAGCATACCTCTCGCGCCTCAGGGCAAAAACGCAACTGTAGTGCTAGGATAGAA
TACAGCAAGGATGCGGTCTC

Downstream 100 bases:

>100_bases
CCGACACACCGACCGCCGGCGCCGAGATGCTGCGCGCCGAAAACATCGTCAAGAGGTTCGGCCCCGTCACGGCGCTGAAC
GGGGTGTCGCTGCGCCTGCG

Product: ribose ABC transporter permease rbsC

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 320; Mature: 319

Protein sequence:

>320_residues
MTRTITGMLRWRELSVIVVAVVLAVYFQIANANFLFSNASLQNLSQFIAPVAIIACGEVMLMIGGEIDLSAGMVYALAPF
VMYFLARAGLPYPLAIGGALLGAATIGAVNGFVTVMLGVPSFVTTLGTLFLLNGLTLTISNGTPVDIEASRTLSFLMGRG
GYAEFLWAVLVVLVMHFMLRNTRWGLHTVAAGANPIGASEAGIRIRSLKIVNFVLCGALAGLTGILEAFRISSIDPTAGG
THIMFLAVAAAVIGGTPLAGGSGTIAGAMIGAMVLGILNDGFTLIGINAFTFDLILGGAILVAMLCNILIGRYRRGIAVS

Sequences:

>Translated_320_residues
MTRTITGMLRWRELSVIVVAVVLAVYFQIANANFLFSNASLQNLSQFIAPVAIIACGEVMLMIGGEIDLSAGMVYALAPF
VMYFLARAGLPYPLAIGGALLGAATIGAVNGFVTVMLGVPSFVTTLGTLFLLNGLTLTISNGTPVDIEASRTLSFLMGRG
GYAEFLWAVLVVLVMHFMLRNTRWGLHTVAAGANPIGASEAGIRIRSLKIVNFVLCGALAGLTGILEAFRISSIDPTAGG
THIMFLAVAAAVIGGTPLAGGSGTIAGAMIGAMVLGILNDGFTLIGINAFTFDLILGGAILVAMLCNILIGRYRRGIAVS
>Mature_319_residues
TRTITGMLRWRELSVIVVAVVLAVYFQIANANFLFSNASLQNLSQFIAPVAIIACGEVMLMIGGEIDLSAGMVYALAPFV
MYFLARAGLPYPLAIGGALLGAATIGAVNGFVTVMLGVPSFVTTLGTLFLLNGLTLTISNGTPVDIEASRTLSFLMGRGG
YAEFLWAVLVVLVMHFMLRNTRWGLHTVAAGANPIGASEAGIRIRSLKIVNFVLCGALAGLTGILEAFRISSIDPTAGGT
HIMFLAVAAAVIGGTPLAGGSGTIAGAMIGAMVLGILNDGFTLIGINAFTFDLILGGAILVAMLCNILIGRYRRGIAVS

Specific function: Probably part of the binding-protein-dependent transport system yphDEF. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG1172

COG function: function code G; Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the binding-protein-dependent transport system permease family. AraH/rbsC subfamily [H]

Homologues:

Organism=Escherichia coli, GI1788896, Length=303, Percent_Identity=33.3333333333333, Blast_Score=127, Evalue=1e-30,
Organism=Escherichia coli, GI1790191, Length=302, Percent_Identity=35.4304635761589, Blast_Score=124, Evalue=6e-30,
Organism=Escherichia coli, GI1790524, Length=308, Percent_Identity=29.2207792207792, Blast_Score=100, Evalue=9e-23,
Organism=Escherichia coli, GI145693152, Length=314, Percent_Identity=29.6178343949045, Blast_Score=96, Evalue=2e-21,
Organism=Escherichia coli, GI1787793, Length=280, Percent_Identity=33.5714285714286, Blast_Score=82, Evalue=3e-17,
Organism=Escherichia coli, GI87082395, Length=245, Percent_Identity=34.2857142857143, Blast_Score=78, Evalue=6e-16,
Organism=Escherichia coli, GI1789992, Length=126, Percent_Identity=34.9206349206349, Blast_Score=66, Evalue=3e-12,
Organism=Escherichia coli, GI145693214, Length=242, Percent_Identity=30.9917355371901, Blast_Score=62, Evalue=4e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001851 [H]

Pfam domain/function: PF02653 BPD_transp_2 [H]

EC number: NA

Molecular weight: Translated: 33202; Mature: 33071

Theoretical pI: Translated: 8.84; Mature: 8.84

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
4.4 %Met     (Translated Protein)
5.3 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
4.1 %Met     (Mature Protein)
5.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTRTITGMLRWRELSVIVVAVVLAVYFQIANANFLFSNASLQNLSQFIAPVAIIACGEVM
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEECCCCHHHHHHHHHHHHHHHHHHEE
LMIGGEIDLSAGMVYALAPFVMYFLARAGLPYPLAIGGALLGAATIGAVNGFVTVMLGVP
EEECCCEECHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCH
SFVTTLGTLFLLNGLTLTISNGTPVDIEASRTLSFLMGRGGYAEFLWAVLVVLVMHFMLR
HHHHHHHHHHHHCCEEEEECCCCCCEEEHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH
NTRWGLHTVAAGANPIGASEAGIRIRSLKIVNFVLCGALAGLTGILEAFRISSIDPTAGG
CCCCCHHHHHCCCCCCCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
THIMFLAVAAAVIGGTPLAGGSGTIAGAMIGAMVLGILNDGFTLIGINAFTFDLILGGAI
HHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEHHHHHHHHHHHHH
LVAMLCNILIGRYRRGIAVS
HHHHHHHHHHHHHCCCCCCC
>Mature Secondary Structure 
TRTITGMLRWRELSVIVVAVVLAVYFQIANANFLFSNASLQNLSQFIAPVAIIACGEVM
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEECCCCHHHHHHHHHHHHHHHHHHEE
LMIGGEIDLSAGMVYALAPFVMYFLARAGLPYPLAIGGALLGAATIGAVNGFVTVMLGVP
EEECCCEECHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCH
SFVTTLGTLFLLNGLTLTISNGTPVDIEASRTLSFLMGRGGYAEFLWAVLVVLVMHFMLR
HHHHHHHHHHHHCCEEEEECCCCCCEEEHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH
NTRWGLHTVAAGANPIGASEAGIRIRSLKIVNFVLCGALAGLTGILEAFRISSIDPTAGG
CCCCCHHHHHCCCCCCCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
THIMFLAVAAAVIGGTPLAGGSGTIAGAMIGAMVLGILNDGFTLIGINAFTFDLILGGAI
HHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEHHHHHHHHHHHHH
LVAMLCNILIGRYRRGIAVS
HHHHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9205837; 9278503 [H]