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The map label for this gene is hupB [C]

Identifier: 162148370

GI number: 162148370

Start: 2681653

End: 2681922

Strand: Direct

Name: hupB [C]

Synonym: GDI_2588

Alternate gene names: 162148370

Gene position: 2681653-2681922 (Clockwise)

Preceding gene: 162148368

Following gene: 162148371

Centisome position: 67.99

GC content: 62.59

Gene sequence:

>270_bases
ATGAGCAAGGCTTTCATCGCCGCCGTTCTTCAGGATTCTCTTGCCTGCACAGGCGTCGCCGCCGGCAAGGCCGCCGACGA
CCTGATTACCGCCATCGTGGCAACCTTGCAGGAGGAAGGCGGTTTCACGCTGCCGTCGTTCGGCACATTCACCGTGCACA
AGACCAAGGCGCGCAAGGCGCTGAACCCCCGCACCGGCGAACCGGTGAAGGTCAAGGCCGGCAAGACCGTCCGTTTCAAG
GCCAGTCCCAACCTGAAAAAGGCGGTCTGA

Upstream 100 bases:

>100_bases
TCACATATGAGTCAGGGCGGACCGGAGTTGGTATTAGACAATTTTCCGGCCTCGCTGCTACCGTTCCCCACGGTCAATAA
CTATTGGGACACGCTCCTCC

Downstream 100 bases:

>100_bases
TCAGGGGCCGGTCCGGCCCCGCCCCGCAGTGGCGCGTGCCGGACCACCCCGAACGGCCCTCCTCCCCGGCGGATGCCTTT
CTGGCAATGCCGCTGGACGG

Product: DNA-binding protein HU-beta

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 89; Mature: 88

Protein sequence:

>89_residues
MSKAFIAAVLQDSLACTGVAAGKAADDLITAIVATLQEEGGFTLPSFGTFTVHKTKARKALNPRTGEPVKVKAGKTVRFK
ASPNLKKAV

Sequences:

>Translated_89_residues
MSKAFIAAVLQDSLACTGVAAGKAADDLITAIVATLQEEGGFTLPSFGTFTVHKTKARKALNPRTGEPVKVKAGKTVRFK
ASPNLKKAV
>Mature_88_residues
SKAFIAAVLQDSLACTGVAAGKAADDLITAIVATLQEEGGFTLPSFGTFTVHKTKARKALNPRTGEPVKVKAGKTVRFKA
SPNLKKAV

Specific function: Histone-Like DNA-Binding Protein Which Is Capable Of Wrapping DNA To Stabilize It, And Thus To Prevent Its Denaturation Under Extreme Environmental Conditions. [C]

COG id: COG0776

COG function: function code L; Bacterial nucleoid DNA-binding protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: 860 Molecules/Cell In: Growth-Phase, Minimal Media (Based on E. coli). 2040 Molecules/Cell In: Stationary-Phase, Rich-Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 9258; Mature: 9127

Theoretical pI: Translated: 10.87; Mature: 10.87

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
0.0 %Met     (Mature Protein)
1.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSKAFIAAVLQDSLACTGVAAGKAADDLITAIVATLQEEGGFTLPSFGTFTVHKTKARKA
CCHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCEECCCCCEEEEECCHHHHC
LNPRTGEPVKVKAGKTVRFKASPNLKKAV
CCCCCCCCEEEECCCEEEEECCCCCCCCC
>Mature Secondary Structure 
SKAFIAAVLQDSLACTGVAAGKAADDLITAIVATLQEEGGFTLPSFGTFTVHKTKARKA
CHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCEECCCCCEEEEECCHHHHC
LNPRTGEPVKVKAGKTVRFKASPNLKKAV
CCCCCCCCEEEECCCEEEEECCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA