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The map label for this gene is rbsC [H]

Identifier: 162148224

GI number: 162148224

Start: 2531123

End: 2532169

Strand: Direct

Name: rbsC [H]

Synonym: GDI_2441

Alternate gene names: 162148224

Gene position: 2531123-2532169 (Clockwise)

Preceding gene: 162148223

Following gene: 162148225

Centisome position: 64.17

GC content: 66.86

Gene sequence:

>1047_bases
ATGAGCGTGACCGACGCGGCATCCGGCCCGCCCCGTTCGGCACCGCGCCCGCTCCGTGCGCGGCTGGCGTGGCTGGTCCG
GTTCCAGAGCCTTCTGGGCCTGGTCCTTGTCGCGGCGGGGGGAATCATATTCTCCCCCCGGCGGCACGGGCACATCCTGT
TCCTGGCACCCGACAATATCGCCAACATCGTCCGTTCGATCTCGGAAACCGGTATCCTGGCGCTGGGCATGACCTTCGTG
ATCATCTCGGGCGGGATCGACCTTTCCGTCGGTGCGCTGCTGGGCCTGTCCAGCGTGCTGACCGCGTCCCTGATGGTCAA
TCACGGATGGGGGATCGCCACCACCCTGCCGCTGGTGCTGCTGATCGGAACGGCGTTCGGGCTGGTTCAGGGCGTGCTGT
CCAATCGCCTGCGGATCCAGGCCTTCATCGTCACGCTTGCCGGGCTTCAGGCCGCGCGCGGCCTGGCGCTGATCGCTTCG
GACAACAACTTCATCAACATCAATTACGGCACCGGCCCCGGCGACGCCCCCCCGGCCTTCGCGATTCTGGGCCAGCGCGT
GTTCGGCAACATCTTTCCCGTGGCGACGCTGGTGTTTGTCGTGCTGGCGGTCATCGCGTCGCTGCTGCTCGATGAAACGC
GGTATGGACGCTATGTCTTTGCCGTGGGCGGCAATGAACGCGCCGCCCGGCTGTCCGGCATCCCGCTGCGATGGATCAAG
GTCACGGTCTATGGCCTGAGCGGCTTCTGCGCGGCGGTCGCGGGGATCGTGCATGCCGGGCAGTTCAGCTTCGGGAGTCC
CAATGACGGTACCGGCTACGAACTGAATGCGATCGCCGCCGTTGTCATCGGCGGGACCGACCTGTTCGGGGGCGCCGGCA
GCATGGTCGGCACCATCGCCGGGGCCGTCATGCTGGGCGCGCTGGCCAATATCCTGCAACTGAACGACGTCAGTGCCGCG
ATGCAGCTTCTGGCAACCGGCCTGATCATCGTCGGCGCGGCCGGACTGCAGACGTTCGTCGGCGCCGGAAACGGCACGCG
CGCGTGA

Upstream 100 bases:

>100_bases
GGATCGTGGTCATGAATCACGGCGTCACGGTTGCCGATTTCGCGGCCGACACAGGCGAGGATGCGCTTCGTGGCGCGGCC
CTGGAAGGCGGGGTCGCCGC

Downstream 100 bases:

>100_bases
AATCATCCGTTGAAACCAAAAACAAGAACAAGAAAGACAAAACGATGATTGTCAGGATTGCCCCTGTCGTCGGCCTGGCG
CTCCTCTTCCCGCTGGCGGC

Product: ribose ABC transporter permease rbsC

Products: ADP; phosphate; ribose [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 348; Mature: 347

Protein sequence:

>348_residues
MSVTDAASGPPRSAPRPLRARLAWLVRFQSLLGLVLVAAGGIIFSPRRHGHILFLAPDNIANIVRSISETGILALGMTFV
IISGGIDLSVGALLGLSSVLTASLMVNHGWGIATTLPLVLLIGTAFGLVQGVLSNRLRIQAFIVTLAGLQAARGLALIAS
DNNFININYGTGPGDAPPAFAILGQRVFGNIFPVATLVFVVLAVIASLLLDETRYGRYVFAVGGNERAARLSGIPLRWIK
VTVYGLSGFCAAVAGIVHAGQFSFGSPNDGTGYELNAIAAVVIGGTDLFGGAGSMVGTIAGAVMLGALANILQLNDVSAA
MQLLATGLIIVGAAGLQTFVGAGNGTRA

Sequences:

>Translated_348_residues
MSVTDAASGPPRSAPRPLRARLAWLVRFQSLLGLVLVAAGGIIFSPRRHGHILFLAPDNIANIVRSISETGILALGMTFV
IISGGIDLSVGALLGLSSVLTASLMVNHGWGIATTLPLVLLIGTAFGLVQGVLSNRLRIQAFIVTLAGLQAARGLALIAS
DNNFININYGTGPGDAPPAFAILGQRVFGNIFPVATLVFVVLAVIASLLLDETRYGRYVFAVGGNERAARLSGIPLRWIK
VTVYGLSGFCAAVAGIVHAGQFSFGSPNDGTGYELNAIAAVVIGGTDLFGGAGSMVGTIAGAVMLGALANILQLNDVSAA
MQLLATGLIIVGAAGLQTFVGAGNGTRA
>Mature_347_residues
SVTDAASGPPRSAPRPLRARLAWLVRFQSLLGLVLVAAGGIIFSPRRHGHILFLAPDNIANIVRSISETGILALGMTFVI
ISGGIDLSVGALLGLSSVLTASLMVNHGWGIATTLPLVLLIGTAFGLVQGVLSNRLRIQAFIVTLAGLQAARGLALIASD
NNFININYGTGPGDAPPAFAILGQRVFGNIFPVATLVFVVLAVIASLLLDETRYGRYVFAVGGNERAARLSGIPLRWIKV
TVYGLSGFCAAVAGIVHAGQFSFGSPNDGTGYELNAIAAVVIGGTDLFGGAGSMVGTIAGAVMLGALANILQLNDVSAAM
QLLATGLIIVGAAGLQTFVGAGNGTRA

Specific function: Part of the binding-protein-dependent transport system for ribose. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the binding-protein-dependent transport system permease family. AraH/rbsC subfamily [H]

Homologues:

Organism=Escherichia coli, GI1790191, Length=310, Percent_Identity=40.6451612903226, Blast_Score=172, Evalue=4e-44,
Organism=Escherichia coli, GI87082395, Length=285, Percent_Identity=37.1929824561403, Blast_Score=142, Evalue=4e-35,
Organism=Escherichia coli, GI145693152, Length=336, Percent_Identity=35.4166666666667, Blast_Score=139, Evalue=4e-34,
Organism=Escherichia coli, GI1788896, Length=303, Percent_Identity=35.6435643564356, Blast_Score=128, Evalue=4e-31,
Organism=Escherichia coli, GI1790524, Length=328, Percent_Identity=32.6219512195122, Blast_Score=127, Evalue=1e-30,
Organism=Escherichia coli, GI145693214, Length=260, Percent_Identity=35.7692307692308, Blast_Score=96, Evalue=4e-21,
Organism=Escherichia coli, GI1787794, Length=312, Percent_Identity=31.0897435897436, Blast_Score=96, Evalue=4e-21,
Organism=Escherichia coli, GI1789992, Length=127, Percent_Identity=40.1574803149606, Blast_Score=92, Evalue=5e-20,
Organism=Escherichia coli, GI1787793, Length=278, Percent_Identity=30.9352517985612, Blast_Score=91, Evalue=1e-19,
Organism=Escherichia coli, GI1788471, Length=226, Percent_Identity=30.9734513274336, Blast_Score=82, Evalue=7e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001851 [H]

Pfam domain/function: PF02653 BPD_transp_2 [H]

EC number: NA

Molecular weight: Translated: 35524; Mature: 35393

Theoretical pI: Translated: 10.48; Mature: 10.48

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSVTDAASGPPRSAPRPLRARLAWLVRFQSLLGLVLVAAGGIIFSPRRHGHILFLAPDNI
CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCEEECCCCCCEEEEECCCHH
ANIVRSISETGILALGMTFVIISGGIDLSVGALLGLSSVLTASLMVNHGWGIATTLPLVL
HHHHHHHHHCCHHHHHHHHEEEECCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHH
LIGTAFGLVQGVLSNRLRIQAFIVTLAGLQAARGLALIASDNNFININYGTGPGDAPPAF
HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCEEEEECCCCEEEEECCCCCCCCCHHH
AILGQRVFGNIFPVATLVFVVLAVIASLLLDETRYGRYVFAVGGNERAARLSGIPLRWIK
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHCCCCEEEEE
VTVYGLSGFCAAVAGIVHAGQFSFGSPNDGTGYELNAIAAVVIGGTDLFGGAGSMVGTIA
EEEECHHHHHHHHHHHHHCCCCCCCCCCCCCCEEHEEEEEEEECCCCCCCCCHHHHHHHH
GAVMLGALANILQLNDVSAAMQLLATGLIIVGAAGLQTFVGAGNGTRA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEHHHHHHHHCCCCCCCC
>Mature Secondary Structure 
SVTDAASGPPRSAPRPLRARLAWLVRFQSLLGLVLVAAGGIIFSPRRHGHILFLAPDNI
CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCEEECCCCCCEEEEECCCHH
ANIVRSISETGILALGMTFVIISGGIDLSVGALLGLSSVLTASLMVNHGWGIATTLPLVL
HHHHHHHHHCCHHHHHHHHEEEECCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHH
LIGTAFGLVQGVLSNRLRIQAFIVTLAGLQAARGLALIASDNNFININYGTGPGDAPPAF
HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCEEEEECCCCEEEEECCCCCCCCCHHH
AILGQRVFGNIFPVATLVFVVLAVIASLLLDETRYGRYVFAVGGNERAARLSGIPLRWIK
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHCCCCEEEEE
VTVYGLSGFCAAVAGIVHAGQFSFGSPNDGTGYELNAIAAVVIGGTDLFGGAGSMVGTIA
EEEECHHHHHHHHHHHHHCCCCCCCCCCCCCCEEHEEEEEEEECCCCCCCCCHHHHHHHH
GAVMLGALANILQLNDVSAAMQLLATGLIIVGAAGLQTFVGAGNGTRA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEHHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; ribose [Periplasm]; H2O [C]

Specific reaction: ATP + ribose [Periplasm] + H2O = ADP + phosphate + ribose [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]