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The map label for this gene is ctrD [H]

Identifier: 162148192

GI number: 162148192

Start: 2497999

End: 2498646

Strand: Reverse

Name: ctrD [H]

Synonym: GDI_2409

Alternate gene names: 162148192

Gene position: 2498646-2497999 (Counterclockwise)

Preceding gene: 162148193

Following gene: 162148191

Centisome position: 63.35

GC content: 49.23

Gene sequence:

>648_bases
ATGATTCGGTGTATTGATCTCGTAAAAGACTATCATACACCCGGTGGAAAGCGGCGTGTGCTTGATCGTGTCAATTTCCA
ACTGGATCGTGGGCAGAAGCTGGGGATACTTGGCCGGAATGGCGCGGGAAAATCGACATTAATCCGCATCATTGGAGGAG
TGGATTTTGCGACGTCGGGACGTATTGAACGTACGATGTCCGTCTCTTGGCCGCTGGCATTCGGTGGGGCCTTCCAGGGA
AGCCTGAGCGGTCTAGATAATTTACGTTTTATTTGCAGGATTTACGATCTCGATTATCCGGCCACGCGTGCATTCGTGGA
TGATTTTGCCGAACTCGGCCGGCAATTAGGGGAGCCGGTCAAGACCTACTCCTCGGGTATGCGGGCACGCCTCGCGTTCG
CATTGTCAATTATCATCGAATTTGATTGCTACCTTATCGATGAGGTTATCATGGTTGGTGACGCTCGCTTTCTGGCTCGG
TGCCAAGATGAACTGTTTGGCAAACGGCGAGAGCGGTCTTTGATAGTCGTCTCACATAATATGGATTTTATACGAGAACA
TTGCGATCATGCTGCAATTATCCATGAGCGCCAATTTTCTCTTTACGATAATGTACAGGATGCAATCGCAACTTACGAAC
GTCTGTAA

Upstream 100 bases:

>100_bases
ATGCACATTTTAATGTGCTCTATAATAGCTGTGCGATTTTTATCATGATTCTTATAGGACTATCGCTGACACTTCGGGTG
CGGCGTTATATATTGGTTCA

Downstream 100 bases:

>100_bases
AGACGAAATTTCATAAAGATGCTATGAAAATTAAATATTAGAGCAATTTATCTCACTTTATCCGATAATAAATACTCTAG
GGTCAGAATCCATTGATATG

Product: capsule polysaccharide export ATP-binding protein ctrD

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 215; Mature: 215

Protein sequence:

>215_residues
MIRCIDLVKDYHTPGGKRRVLDRVNFQLDRGQKLGILGRNGAGKSTLIRIIGGVDFATSGRIERTMSVSWPLAFGGAFQG
SLSGLDNLRFICRIYDLDYPATRAFVDDFAELGRQLGEPVKTYSSGMRARLAFALSIIIEFDCYLIDEVIMVGDARFLAR
CQDELFGKRRERSLIVVSHNMDFIREHCDHAAIIHERQFSLYDNVQDAIATYERL

Sequences:

>Translated_215_residues
MIRCIDLVKDYHTPGGKRRVLDRVNFQLDRGQKLGILGRNGAGKSTLIRIIGGVDFATSGRIERTMSVSWPLAFGGAFQG
SLSGLDNLRFICRIYDLDYPATRAFVDDFAELGRQLGEPVKTYSSGMRARLAFALSIIIEFDCYLIDEVIMVGDARFLAR
CQDELFGKRRERSLIVVSHNMDFIREHCDHAAIIHERQFSLYDNVQDAIATYERL
>Mature_215_residues
MIRCIDLVKDYHTPGGKRRVLDRVNFQLDRGQKLGILGRNGAGKSTLIRIIGGVDFATSGRIERTMSVSWPLAFGGAFQG
SLSGLDNLRFICRIYDLDYPATRAFVDDFAELGRQLGEPVKTYSSGMRARLAFALSIIIEFDCYLIDEVIMVGDARFLAR
CQDELFGKRRERSLIVVSHNMDFIREHCDHAAIIHERQFSLYDNVQDAIATYERL

Specific function: Putative ATP-binding protein, and an energy-coupling component of capsule polysaccharide export apparatus [H]

COG id: COG1134

COG function: function code GM; ABC-type polysaccharide/polyol phosphate transport system, ATPase component

Gene ontology:

Cell location: Cell inner membrane; Peripheral membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transporter domain [H]

Homologues:

Organism=Escherichia coli, GI1789751, Length=193, Percent_Identity=28.4974093264249, Blast_Score=70, Evalue=1e-13,
Organism=Escherichia coli, GI2367384, Length=201, Percent_Identity=29.8507462686567, Blast_Score=60, Evalue=1e-10,
Organism=Drosophila melanogaster, GI221460257, Length=211, Percent_Identity=27.9620853080569, Blast_Score=64, Evalue=6e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003439
- InterPro:   IPR017871
- InterPro:   IPR003593 [H]

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 24387; Mature: 24387

Theoretical pI: Translated: 7.89; Mature: 7.89

Prosite motif: PS00211 ABC_TRANSPORTER_1 ; PS50893 ABC_TRANSPORTER_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.3 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
4.7 %Cys+Met (Translated Protein)
2.3 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
4.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIRCIDLVKDYHTPGGKRRVLDRVNFQLDRGQKLGILGRNGAGKSTLIRIIGGVDFATSG
CCHHHHHHHHHCCCCHHHHHHHHHCCEECCCCEEEEEECCCCCHHHHHHHHCCCCCCCCC
RIERTMSVSWPLAFGGAFQGSLSGLDNLRFICRIYDLDYPATRAFVDDFAELGRQLGEPV
CCEEEEEECCCEEECCCCCCCCCCHHHHEEEHHEECCCCCHHHHHHHHHHHHHHHHCCHH
KTYSSGMRARLAFALSIIIEFDCYLIDEVIMVGDARFLARCQDELFGKRRERSLIVVSHN
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCEEEEEECC
MDFIREHCDHAAIIHERQFSLYDNVQDAIATYERL
HHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MIRCIDLVKDYHTPGGKRRVLDRVNFQLDRGQKLGILGRNGAGKSTLIRIIGGVDFATSG
CCHHHHHHHHHCCCCHHHHHHHHHCCEECCCCEEEEEECCCCCHHHHHHHHCCCCCCCCC
RIERTMSVSWPLAFGGAFQGSLSGLDNLRFICRIYDLDYPATRAFVDDFAELGRQLGEPV
CCEEEEEECCCEEECCCCCCCCCCHHHHEEEHHEECCCCCHHHHHHHHHHHHHHHHCCHH
KTYSSGMRARLAFALSIIIEFDCYLIDEVIMVGDARFLARCQDELFGKRRERSLIVVSHN
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCEEEEEECC
MDFIREHCDHAAIIHERQFSLYDNVQDAIATYERL
HHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 3284653; 2082145 [H]