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The map label for this gene is kdsD [C]

Identifier: 162147899

GI number: 162147899

Start: 2170006

End: 2171067

Strand: Direct

Name: kdsD [C]

Synonym: GDI_2115

Alternate gene names: 162147899

Gene position: 2170006-2171067 (Clockwise)

Preceding gene: 162147898

Following gene: 162147900

Centisome position: 55.02

GC content: 71.75

Gene sequence:

>1062_bases
ATGACCCAACCCGCCTTCCATGACGATGCCGGCGCACCCGCGGACGAGGCCCGGATCCAGTCCGACATCACCGCCGCGTG
CCGCGTTCTGGCGCGCGAGAGCGACGGACTGGCCCGGCTGGCGGCCGCCCTGCGCGCCCCGGCGGTATCCGACGAGCCGG
AAGGCATCACGCCGCTGGGCACGGCCTTCGCACGGGCGGTCGATGCGTTTTCGACGCTGGCGGGCCGGGTCATCGTGACG
GGTATCGGCAAGTCCGGCCATGTCGGGCGCAAGATCCAGTCCACCCTGGCATCGACCGGAACGCCCTCGGTCTTCGTGCA
TCCGTCCGAAGCGTCGCACGGCGACCTGGGCATGATCCAGCGGGGCGATGCGGTGCTGGCCCTGTCCAATTCCGGCGAAA
CGGCGGAACTGGCCGACATCGTGGCGCACGCCCGCCGCTATGGCCTGCTGCTGGCCGCCATTACCGCCACACCCGATTCG
ACCCTGGCCCGGGCCGCCGACATCGCCCTGATCGTGCCGAAGGCGCCGGAGGCCTGCCCGATGGGCCTGGCCCCCACCAC
GTCGACGACCATGCAGATGGCGCTGGGCGACGCGCTGGCCGTTGTGCTGCTGGAGCGGCGAAATTTCTCCGCCACCGATT
TCGGCGTCTTCCATCCCGGCGGCCGGCTGGGCACGCGGCTGCGCCGCGTCAGCGACCTGATGCATCGGGGCGCCGCCATG
CCGCTGGGCACACCGGACATCGCGATGCGCCAGGTCATCATGGAAATGACGCGCAAGGCCTTCGGCTGCATCGGTGTCGT
CGCCCCGGACGGGCGGCTGCGCGGGCTGATCACCGACGGCGACCTGCGCCGGGCGCTGGACCGCGACCTGGACAGCACGC
TGGCCGCCGACATCATGAACCCCACCCCGCTGACCACCGGCCCCGACGTGCTGGCGGCCGAGGCCCTGCGCCTGATGAAC
GCGCGGGCGCGGCCGATCACCAGCCTGTTCGTGGTGGACGCGGCCGGGCTCCCGGTCGGCATCCTGCATATCCACGACCT
TCTGCGGGCGGGCGTCGCATGA

Upstream 100 bases:

>100_bases
GATCCGGATATCTTCGCCCACCGGGCATGACGCGGCACGCCGCCCCTCCGCGCCGGGTCCGGTTTGACCGCGACCCCCAT
CATGGCGATACACGGGCGGC

Downstream 100 bases:

>100_bases
GCGCGTCTCCTCCCCCGCCCTCCAGGGACCCCACGGCACCGCGTCGCGAGGATTTCGCCCGTTCGGCGGACGACGTCGCC
CGCCAGCGCACCGTCCTGCA

Product: arabinose 5-phosphate isomerase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 353; Mature: 352

Protein sequence:

>353_residues
MTQPAFHDDAGAPADEARIQSDITAACRVLARESDGLARLAAALRAPAVSDEPEGITPLGTAFARAVDAFSTLAGRVIVT
GIGKSGHVGRKIQSTLASTGTPSVFVHPSEASHGDLGMIQRGDAVLALSNSGETAELADIVAHARRYGLLLAAITATPDS
TLARAADIALIVPKAPEACPMGLAPTTSTTMQMALGDALAVVLLERRNFSATDFGVFHPGGRLGTRLRRVSDLMHRGAAM
PLGTPDIAMRQVIMEMTRKAFGCIGVVAPDGRLRGLITDGDLRRALDRDLDSTLAADIMNPTPLTTGPDVLAAEALRLMN
ARARPITSLFVVDAAGLPVGILHIHDLLRAGVA

Sequences:

>Translated_353_residues
MTQPAFHDDAGAPADEARIQSDITAACRVLARESDGLARLAAALRAPAVSDEPEGITPLGTAFARAVDAFSTLAGRVIVT
GIGKSGHVGRKIQSTLASTGTPSVFVHPSEASHGDLGMIQRGDAVLALSNSGETAELADIVAHARRYGLLLAAITATPDS
TLARAADIALIVPKAPEACPMGLAPTTSTTMQMALGDALAVVLLERRNFSATDFGVFHPGGRLGTRLRRVSDLMHRGAAM
PLGTPDIAMRQVIMEMTRKAFGCIGVVAPDGRLRGLITDGDLRRALDRDLDSTLAADIMNPTPLTTGPDVLAAEALRLMN
ARARPITSLFVVDAAGLPVGILHIHDLLRAGVA
>Mature_352_residues
TQPAFHDDAGAPADEARIQSDITAACRVLARESDGLARLAAALRAPAVSDEPEGITPLGTAFARAVDAFSTLAGRVIVTG
IGKSGHVGRKIQSTLASTGTPSVFVHPSEASHGDLGMIQRGDAVLALSNSGETAELADIVAHARRYGLLLAAITATPDST
LARAADIALIVPKAPEACPMGLAPTTSTTMQMALGDALAVVLLERRNFSATDFGVFHPGGRLGTRLRRVSDLMHRGAAMP
LGTPDIAMRQVIMEMTRKAFGCIGVVAPDGRLRGLITDGDLRRALDRDLDSTLAADIMNPTPLTTGPDVLAAEALRLMNA
RARPITSLFVVDAAGLPVGILHIHDLLRAGVA

Specific function: Unknown

COG id: COG0794

COG function: function code M; Predicted sugar phosphate isomerase involved in capsule formation

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 SIS domain [H]

Homologues:

Organism=Escherichia coli, GI1789588, Length=297, Percent_Identity=47.8114478114478, Blast_Score=265, Evalue=4e-72,
Organism=Escherichia coli, GI87082151, Length=301, Percent_Identity=39.5348837209302, Blast_Score=193, Evalue=2e-50,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013785
- InterPro:   IPR000644
- InterPro:   IPR004800
- InterPro:   IPR001347 [H]

Pfam domain/function: PF00571 CBS; PF01380 SIS [H]

EC number: NA

Molecular weight: Translated: 36702; Mature: 36571

Theoretical pI: Translated: 6.80; Mature: 6.80

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTQPAFHDDAGAPADEARIQSDITAACRVLARESDGLARLAAALRAPAVSDEPEGITPLG
CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCCCCCCHHH
TAFARAVDAFSTLAGRVIVTGIGKSGHVGRKIQSTLASTGTPSVFVHPSEASHGDLGMIQ
HHHHHHHHHHHHHHCEEEEEECCCCCCCHHHHHHHHHCCCCCEEEEECCCCCCCCCCEEE
RGDAVLALSNSGETAELADIVAHARRYGLLLAAITATPDSTLARAADIALIVPKAPEACP
CCCEEEEECCCCCHHHHHHHHHHHHHHHEEEEEEECCCCHHHHHHCCEEEEECCCCCCCC
MGLAPTTSTTMQMALGDALAVVLLERRNFSATDFGVFHPGGRLGTRLRRVSDLMHRGAAM
CCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCEECCCHHHHHHHHHHHHHHHCCCCC
PLGTPDIAMRQVIMEMTRKAFGCIGVVAPDGRLRGLITDGDLRRALDRDLDSTLAADIMN
CCCCHHHHHHHHHHHHHHHHHCEEEEECCCCCEEEEEECHHHHHHHHHHHHHHHHHHCCC
PTPLTTGPDVLAAEALRLMNARARPITSLFVVDAAGLPVGILHIHDLLRAGVA
CCCCCCCCHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCHHHHHHHHHHHCCC
>Mature Secondary Structure 
TQPAFHDDAGAPADEARIQSDITAACRVLARESDGLARLAAALRAPAVSDEPEGITPLG
CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCCCCCCHHH
TAFARAVDAFSTLAGRVIVTGIGKSGHVGRKIQSTLASTGTPSVFVHPSEASHGDLGMIQ
HHHHHHHHHHHHHHCEEEEEECCCCCCCHHHHHHHHHCCCCCEEEEECCCCCCCCCCEEE
RGDAVLALSNSGETAELADIVAHARRYGLLLAAITATPDSTLARAADIALIVPKAPEACP
CCCEEEEECCCCCHHHHHHHHHHHHHHHEEEEEEECCCCHHHHHHCCEEEEECCCCCCCC
MGLAPTTSTTMQMALGDALAVVLLERRNFSATDFGVFHPGGRLGTRLRRVSDLMHRGAAM
CCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCEECCCHHHHHHHHHHHHHHHCCCCC
PLGTPDIAMRQVIMEMTRKAFGCIGVVAPDGRLRGLITDGDLRRALDRDLDSTLAADIMN
CCCCHHHHHHHHHHHHHHHHHCEEEEECCCCCEEEEEECHHHHHHHHHHHHHHHHHHCCC
PTPLTTGPDVLAAEALRLMNARARPITSLFVVDAAGLPVGILHIHDLLRAGVA
CCCCCCCCHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9537320 [H]