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The map label for this gene is secB

Identifier: 162147852

GI number: 162147852

Start: 2113407

End: 2113922

Strand: Direct

Name: secB

Synonym: GDI_2068

Alternate gene names: 162147852

Gene position: 2113407-2113922 (Clockwise)

Preceding gene: 162147843

Following gene: 162147855

Centisome position: 53.58

GC content: 65.12

Gene sequence:

>516_bases
ATGTCCGACACGACCCAGCCCCCCGCCGATGACGCCCAGAACGTTCCGCCGGCGATGCCGCTGACCATCAATGTTCAGTA
TATCAAGGATCTGTCGTTCGAAGTTCCCGCCGGCGCTGAAATCTTCGCGACCCTGCGCGCGAATCCCCAGATCGCGGTGA
ACATCGACGTGCAGGCCAATCGCCTGCAGGCCGAGCATCCGGTGTTCGAAGTCGTTCTGGCGATCAAGACCGAAGCCCTG
GAAGCGCCGGAAAAGGAAGGCGCCGCCCCCGGCCGCCCGGTGTTCATCGCCGAACTGGCCTATGGCGCCGTCGTGACCCT
GACCAACGCACCGGACGAACTGGTCGAGCCGATCCTGCTGGTCGAAGTGCCGCGCCTGATCTTCCCGTACGTGCGCAACA
TCATCAGCGAAGTGACGCGTGACGGCGGGTTCCCGCCCGTGGTGCTGCAGCCGATCGACTTCGTGGCGCTGTGGCAGGCC
AAGCGCAGCTTCCCCCAGACGGCCGGCAACGCCTGA

Upstream 100 bases:

>100_bases
CACTCCCCCGCCGCCGTCCGCCGAGGTTGGCGAACGGCGCGGGGCGTGCTACCGGCGAGGCTCGGTATCCGCCTTCTGCC
TGCTAAGGAAAGCTTCGTTC

Downstream 100 bases:

>100_bases
TCGGGATATCCGGGCGGGCCGCCTGAGGCCCCCCATCGAAGGCCCGCCTCGCGCGGGCCTTTTTCATTTTGCGGCTTTCA
TTCCCCGGCCGGTCGCCGCC

Product: preprotein translocase subunit SecB

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 171; Mature: 170

Protein sequence:

>171_residues
MSDTTQPPADDAQNVPPAMPLTINVQYIKDLSFEVPAGAEIFATLRANPQIAVNIDVQANRLQAEHPVFEVVLAIKTEAL
EAPEKEGAAPGRPVFIAELAYGAVVTLTNAPDELVEPILLVEVPRLIFPYVRNIISEVTRDGGFPPVVLQPIDFVALWQA
KRSFPQTAGNA

Sequences:

>Translated_171_residues
MSDTTQPPADDAQNVPPAMPLTINVQYIKDLSFEVPAGAEIFATLRANPQIAVNIDVQANRLQAEHPVFEVVLAIKTEAL
EAPEKEGAAPGRPVFIAELAYGAVVTLTNAPDELVEPILLVEVPRLIFPYVRNIISEVTRDGGFPPVVLQPIDFVALWQA
KRSFPQTAGNA
>Mature_170_residues
SDTTQPPADDAQNVPPAMPLTINVQYIKDLSFEVPAGAEIFATLRANPQIAVNIDVQANRLQAEHPVFEVVLAIKTEALE
APEKEGAAPGRPVFIAELAYGAVVTLTNAPDELVEPILLVEVPRLIFPYVRNIISEVTRDGGFPPVVLQPIDFVALWQAK
RSFPQTAGNA

Specific function: One of the proteins required for the normal export of preproteins out of the cell cytoplasm. It is a molecular chaperone that binds to a subset of precursor proteins, maintaining them in a translocation-competent state. It also specifically binds to its r

COG id: COG1952

COG function: function code U; Preprotein translocase subunit SecB

Gene ontology:

Cell location: Cytoplasm

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the secB family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): SECB_GLUDA (A9HK92)

Other databases:

- EMBL:   AM889285
- EMBL:   CP001189
- RefSeq:   YP_001602313.1
- RefSeq:   YP_002274701.1
- ProteinModelPortal:   A9HK92
- SMR:   A9HK92
- GeneID:   5792425
- GeneID:   6973681
- GenomeReviews:   AM889285_GR
- GenomeReviews:   CP001189_GR
- KEGG:   gdj:Gdia_0289
- HOGENOM:   HBG294212
- OMA:   NIDVQAN
- ProtClustDB:   PRK05751
- GO:   GO:0005737
- HAMAP:   MF_00821
- InterPro:   IPR003708
- Gene3D:   G3DSA:3.10.420.10
- PRINTS:   PR01594

Pfam domain/function: PF02556 SecB; SSF54611 SecB

EC number: NA

Molecular weight: Translated: 18505; Mature: 18374

Theoretical pI: Translated: 4.17; Mature: 4.17

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
1.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.6 %Met     (Mature Protein)
0.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSDTTQPPADDAQNVPPAMPLTINVQYIKDLSFEVPAGAEIFATLRANPQIAVNIDVQAN
CCCCCCCCCCCCCCCCCCCEEEEEEEEEECCCCCCCCCCEEEEEEECCCEEEEEEEEECC
RLQAEHPVFEVVLAIKTEALEAPEKEGAAPGRPVFIAELAYGAVVTLTNAPDELVEPILL
CCCCCCCHHHHHHHHHHHHHCCCHHCCCCCCCCEEEEEECCCEEEEECCCCHHHHCHHHH
VEVPRLIFPYVRNIISEVTRDGGFPPVVLQPIDFVALWQAKRSFPQTAGNA
HHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCHHHHHHHHHCCCCCCCCC
>Mature Secondary Structure 
SDTTQPPADDAQNVPPAMPLTINVQYIKDLSFEVPAGAEIFATLRANPQIAVNIDVQAN
CCCCCCCCCCCCCCCCCCEEEEEEEEEECCCCCCCCCCEEEEEEECCCEEEEEEEEECC
RLQAEHPVFEVVLAIKTEALEAPEKEGAAPGRPVFIAELAYGAVVTLTNAPDELVEPILL
CCCCCCCHHHHHHHHHHHHHCCCHHCCCCCCCCEEEEEECCCEEEEECCCCHHHHCHHHH
VEVPRLIFPYVRNIISEVTRDGGFPPVVLQPIDFVALWQAKRSFPQTAGNA
HHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCHHHHHHHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA