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The map label for this gene is fliN [H]

Identifier: 162147463

GI number: 162147463

Start: 1704602

End: 1704979

Strand: Direct

Name: fliN [H]

Synonym: GDI_1679

Alternate gene names: 162147463

Gene position: 1704602-1704979 (Clockwise)

Preceding gene: 162147462

Following gene: 162147464

Centisome position: 43.22

GC content: 64.55

Gene sequence:

>378_bases
ATGAGCACTAACGACCCAGGCATCGGACTTGAGGATTTCTCCAGCGCCGCTCCGTCGCCCGCGGGCGCGGAGCCGGATGG
CAGCGCAACGGCGGCCGGCCGGAAGCAGAAGAATGGCGACGGCTCCGGCCAGATGGAAGCGGTCTACGACATCCCGGTGA
AGATCACGGCCGTGATCGGTTCGGCGACGATGCCCGTCAGCCAGTTGCTCAAGCTCGGTCGCGGCGCGGTCGTGGAACTG
GACAGGAAGTTGGGGGAGGCCGTGGATATCTATGCGAACAACCGGCTGATCGCCCGGGGCGAGGTCGTCGTGGTCGATGA
CAACCATATCGGCGTGACAATGACAGAGATCATTTCGTCGGCCGCCGTGTCCGGCTAG

Upstream 100 bases:

>100_bases
GAAAATCCGTTGCCGAGAAAATTGTTGCCGCAGTGACGGCCCTCGCGGAGCGGCGCGTGGATCAGGGCGTGCAGAAAGCA
TAGATCAGGCGGAGAGTACC

Downstream 100 bases:

>100_bases
GAGACATCGGAATGTCCGGGACAGGTGTTCCGAACATGTCCCAGACCGGGTCGCTCGCGCATGGCACGGGACCGTTCGCC
ACCGTGTGGCTGACGGGCCT

Product: flagellar motor switch protein fliN

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 125; Mature: 124

Protein sequence:

>125_residues
MSTNDPGIGLEDFSSAAPSPAGAEPDGSATAAGRKQKNGDGSGQMEAVYDIPVKITAVIGSATMPVSQLLKLGRGAVVEL
DRKLGEAVDIYANNRLIARGEVVVVDDNHIGVTMTEIISSAAVSG

Sequences:

>Translated_125_residues
MSTNDPGIGLEDFSSAAPSPAGAEPDGSATAAGRKQKNGDGSGQMEAVYDIPVKITAVIGSATMPVSQLLKLGRGAVVEL
DRKLGEAVDIYANNRLIARGEVVVVDDNHIGVTMTEIISSAAVSG
>Mature_124_residues
STNDPGIGLEDFSSAAPSPAGAEPDGSATAAGRKQKNGDGSGQMEAVYDIPVKITAVIGSATMPVSQLLKLGRGAVVELD
RKLGEAVDIYANNRLIARGEVVVVDDNHIGVTMTEIISSAAVSG

Specific function: FliN is one of three proteins (FliG, FliN, FliM) that form the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the mot

COG id: COG1886

COG function: function code NU; Flagellar motor switch/type III secretory pathway protein

Gene ontology:

Cell location: Cell inner membrane; Peripheral membrane protein; Cytoplasmic side. Bacterial flagellum basal body [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the FliN/MopA/SpaO family [H]

Homologues:

Organism=Escherichia coli, GI1788256, Length=114, Percent_Identity=40.3508771929825, Blast_Score=69, Evalue=9e-14,

Paralogues:

None

Copy number: 10-20 (rich media) [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012826
- InterPro:   IPR001172
- InterPro:   IPR001543 [H]

Pfam domain/function: PF01052 SpoA [H]

EC number: NA

Molecular weight: Translated: 12709; Mature: 12578

Theoretical pI: Translated: 4.35; Mature: 4.35

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSTNDPGIGLEDFSSAAPSPAGAEPDGSATAAGRKQKNGDGSGQMEAVYDIPVKITAVIG
CCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCEEEEEEEC
SATMPVSQLLKLGRGAVVELDRKLGEAVDIYANNRLIARGEVVVVDDNHIGVTMTEIISS
CCCCCHHHHHHCCCCCEEEEHHHCCCEEEEEECCEEEECCCEEEEECCCCCEEHHHHHHH
AAVSG
HHCCC
>Mature Secondary Structure 
STNDPGIGLEDFSSAAPSPAGAEPDGSATAAGRKQKNGDGSGQMEAVYDIPVKITAVIG
CCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCEEEEEEEC
SATMPVSQLLKLGRGAVVELDRKLGEAVDIYANNRLIARGEVVVVDDNHIGVTMTEIISS
CCCCCHHHHHHCCCCCEEEEHHHCCCEEEEEECCEEEECCCEEEEECCCCCEEHHHHHHH
AAVSG
HHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8002583; 11259647; 2315326; 1732219 [H]