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The map label for this gene is slyA [H]

Identifier: 162147386

GI number: 162147386

Start: 1602614

End: 1603243

Strand: Direct

Name: slyA [H]

Synonym: GDI_1601

Alternate gene names: 162147386

Gene position: 1602614-1603243 (Clockwise)

Preceding gene: 162147385

Following gene: 162147387

Centisome position: 40.63

GC content: 66.03

Gene sequence:

>630_bases
TTGCCGATTGGGGACCATGCCGAAATTGCATTGGCCCCAGCCCGGCATTTCTGGAAACGTGCACTTGATCCATATCATCG
TGAGCATACGAACCATTCGGATGCTCATCAGTGTCAGGGAAATCAGGTAGCATCACGGATGGACGACTCCGAGCGTAGCG
TGCGGGAACGGTCCTTTGGACGTCGTCTGGCCCATCTGGGAGCAGCCTGGCGCCGCCAGATCGATCACGATCTGCGGGAT
TTCGGCCTGACCGAAGCCACGTGGCGCCCCATCCTCTATCTGGGCCAGCTTCCTGCCCCGGTGCGCCAGACCGCCCTGGC
GCGGGTGCTGGACATCGAGGCCCCGTCCCTGGCGCGGCTGCTGGACGTGCTGGAACGGCAGGGCCTGATCGTCCGCATCC
GCGACGAGGAAGACCGGCGGTCCAATCTGGTGCGCCTGACCCGGCAGGGCCACGCGATCGAACAGCAGGTGCGCCAGGCG
GCCGACAGCGTCTCCGCACGGTTGCTGGCCACCGTCACCGACGATGAACTGCAGACCTGCTACGCGGTGTTCGACCGGAT
CGACTCCGCGCTGGGCGCGCGGCGCGACCCCTCGTCCCGCAGGCCCACGAAGATGGGCGCCGTCGCATGA

Upstream 100 bases:

>100_bases
CTGTCCACGGGCGCGCGCCCGGGCAATCCGCCGCGCGCCCGCATTCCCCCCCGGCATATCGCCAGCATATCGTTAGTCCC
CGGTAAGGCGAGAGACGACA

Downstream 100 bases:

>100_bases
GGCTGATCCCGCCCGGCGGCTCGTTGTCCCTGTCACGGTCCCTGCTGCGTTTCGGCACCTTCGCCTTTCCGGAATGGACG
TCGGTCGCGCCCACGCTGGG

Product: transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 209; Mature: 208

Protein sequence:

>209_residues
MPIGDHAEIALAPARHFWKRALDPYHREHTNHSDAHQCQGNQVASRMDDSERSVRERSFGRRLAHLGAAWRRQIDHDLRD
FGLTEATWRPILYLGQLPAPVRQTALARVLDIEAPSLARLLDVLERQGLIVRIRDEEDRRSNLVRLTRQGHAIEQQVRQA
ADSVSARLLATVTDDELQTCYAVFDRIDSALGARRDPSSRRPTKMGAVA

Sequences:

>Translated_209_residues
MPIGDHAEIALAPARHFWKRALDPYHREHTNHSDAHQCQGNQVASRMDDSERSVRERSFGRRLAHLGAAWRRQIDHDLRD
FGLTEATWRPILYLGQLPAPVRQTALARVLDIEAPSLARLLDVLERQGLIVRIRDEEDRRSNLVRLTRQGHAIEQQVRQA
ADSVSARLLATVTDDELQTCYAVFDRIDSALGARRDPSSRRPTKMGAVA
>Mature_208_residues
PIGDHAEIALAPARHFWKRALDPYHREHTNHSDAHQCQGNQVASRMDDSERSVRERSFGRRLAHLGAAWRRQIDHDLRDF
GLTEATWRPILYLGQLPAPVRQTALARVLDIEAPSLARLLDVLERQGLIVRIRDEEDRRSNLVRLTRQGHAIEQQVRQAA
DSVSARLLATVTDDELQTCYAVFDRIDSALGARRDPSSRRPTKMGAVA

Specific function: Transcription regulator that can both activate or repress expression [H]

COG id: COG1846

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH marR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI87081950, Length=133, Percent_Identity=32.3308270676692, Blast_Score=75, Evalue=4e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000835
- InterPro:   IPR023071
- InterPro:   IPR023187
- InterPro:   IPR011991 [H]

Pfam domain/function: PF01047 MarR [H]

EC number: NA

Molecular weight: Translated: 23748; Mature: 23617

Theoretical pI: Translated: 9.28; Mature: 9.28

Prosite motif: PS01117 HTH_MARR_1 ; PS50995 HTH_MARR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPIGDHAEIALAPARHFWKRALDPYHREHTNHSDAHQCQGNQVASRMDDSERSVRERSFG
CCCCCCCCEEEHHHHHHHHHHCCHHHHHCCCCCHHHHCCCHHHHHHCCHHHHHHHHHHHH
RRLAHLGAAWRRQIDHDLRDFGLTEATWRPILYLGQLPAPVRQTALARVLDIEAPSLARL
HHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCHHHHHH
LDVLERQGLIVRIRDEEDRRSNLVRLTRQGHAIEQQVRQAADSVSARLLATVTDDELQTC
HHHHHHCCCEEEEECCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHH
YAVFDRIDSALGARRDPSSRRPTKMGAVA
HHHHHHHHHHHCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure 
PIGDHAEIALAPARHFWKRALDPYHREHTNHSDAHQCQGNQVASRMDDSERSVRERSFG
CCCCCCCEEEHHHHHHHHHHCCHHHHHCCCCCHHHHCCCHHHHHHCCHHHHHHHHHHHH
RRLAHLGAAWRRQIDHDLRDFGLTEATWRPILYLGQLPAPVRQTALARVLDIEAPSLARL
HHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCHHHHHH
LDVLERQGLIVRIRDEEDRRSNLVRLTRQGHAIEQQVRQAADSVSARLLATVTDDELQTC
HHHHHHCCCEEEEECCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHH
YAVFDRIDSALGARRDPSSRRPTKMGAVA
HHHHHHHHHHHCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA