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The map label for this gene is potA [H]

Identifier: 162147383

GI number: 162147383

Start: 1600550

End: 1601659

Strand: Reverse

Name: potA [H]

Synonym: GDI_1598

Alternate gene names: 162147383

Gene position: 1601659-1600550 (Counterclockwise)

Preceding gene: 162147392

Following gene: 162147382

Centisome position: 40.61

GC content: 73.96

Gene sequence:

>1110_bases
ATGTCTCCCTTCTCTCCACGTCTTGACGTTCGCGGACTTGTGTGTGCCCCGCTGGGGCAATCGACGCCGGCACTGACCTT
CCAGATCGATCCCGGCACCTGCCTGGCGCTGCTGGGCCATCGCGCGGCCGACCTGTCCCGCGTGCTGGACACGCTGGCCG
GCCACCTGCCGTGTCCGGCCGGCGATATCCTGGTCGACGGGCGGGAGGTGTCGGCGCTGGTGCCCGGCGGGCGGGGCATG
GGGCTGTTCAGCGCGCGCGACCCGCTGTTCGCGCACCTGACGGTGCGGCAGAACCTGGCCTTCCCGCTGCGCGCACGCGG
TCTTTCGCGCGCCGCCGCCGCCGCCCGGGTCGATGAAATCCTGGCCCTGACCGGGCTGGACGGCCAGGCGGCCCGTCATC
CCCGCGATCTGGACCCCGAGGACTCGTGGCGTGCGCGCCTGGGCCGGCTTCTGGTCTTCGCGCCCCCGATGCTGCTGCTG
GACGACCCGTTCGCAAGCCTGGAGCCCGAAGGCAGGCGGGCGATGCGCCAGCTTCTGGGGCGCCTGATGCGGGCGCGGGG
GCTGACGATGCTTCTGGCCACCCGCGACCGCGAGGACGCGCTGCTGCTGGGCGGGCGGATCGGCATCCTGTCCGGCCGCG
CGCTATTGCAGGTGGGGCAGGCGGCCGACCTGTTCGACCGCCCCGCCTGCGACCGGGTGGCCACCGCGTTCGGGGACGCC
AATGCCCTGACCGGCCGCGTCGCGTGGGTGGAGGACGACCTGGCCCGTGTCCGCCTGGCCAGCGGCGCGGTGGTCGAGGC
CGCGGCCGCCGGGGGGCTGGCGGCCGATGCACTCTGCACGCTGTGCATCCGCCCCGATCGCATCGCCACCCTGTTTCCCA
CGGGCCGCCCGTCCGAGGGCGAGGAGGGCGACCTGCCCGCGACCCTGATCGCGCTGCATCACATGGGCGACCACGTCCGC
CTGCGGTTCCGCCTGGGGGACGGGCAGGAGGTCCTGGTCCGGCGCCCGCCGGCACAGACCCTGGCGGGCCTGGTGCCCGG
CCGGCCCGCACTGCTGGCGTGGCAGCCGGCACATGCCGTAGCCTTTCCGTTTCGTGCTGAAATAGGGTAG

Upstream 100 bases:

>100_bases
GGGTTTTTTGGCCTTGCTTCGGAACACAGGTCGTATCCTTCATCCGGGTTGTCTACACTCTACCCAACGCGTCGCTCGTT
CGTCAGGTTTCGGTTTTTGC

Downstream 100 bases:

>100_bases
CGTTCCGCCCTCGTTCTGCCCTTCGAAAGTTCAGCCCCCTGTCCGGTTCGTCCCGTCCGTCCCTCCGTCCGTTCCCGCGT
CCGTCCCGGCGCCTGTTCGG

Product: ABC transporter ATP-binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 369; Mature: 368

Protein sequence:

>369_residues
MSPFSPRLDVRGLVCAPLGQSTPALTFQIDPGTCLALLGHRAADLSRVLDTLAGHLPCPAGDILVDGREVSALVPGGRGM
GLFSARDPLFAHLTVRQNLAFPLRARGLSRAAAAARVDEILALTGLDGQAARHPRDLDPEDSWRARLGRLLVFAPPMLLL
DDPFASLEPEGRRAMRQLLGRLMRARGLTMLLATRDREDALLLGGRIGILSGRALLQVGQAADLFDRPACDRVATAFGDA
NALTGRVAWVEDDLARVRLASGAVVEAAAAGGLAADALCTLCIRPDRIATLFPTGRPSEGEEGDLPATLIALHHMGDHVR
LRFRLGDGQEVLVRRPPAQTLAGLVPGRPALLAWQPAHAVAFPFRAEIG

Sequences:

>Translated_369_residues
MSPFSPRLDVRGLVCAPLGQSTPALTFQIDPGTCLALLGHRAADLSRVLDTLAGHLPCPAGDILVDGREVSALVPGGRGM
GLFSARDPLFAHLTVRQNLAFPLRARGLSRAAAAARVDEILALTGLDGQAARHPRDLDPEDSWRARLGRLLVFAPPMLLL
DDPFASLEPEGRRAMRQLLGRLMRARGLTMLLATRDREDALLLGGRIGILSGRALLQVGQAADLFDRPACDRVATAFGDA
NALTGRVAWVEDDLARVRLASGAVVEAAAAGGLAADALCTLCIRPDRIATLFPTGRPSEGEEGDLPATLIALHHMGDHVR
LRFRLGDGQEVLVRRPPAQTLAGLVPGRPALLAWQPAHAVAFPFRAEIG
>Mature_368_residues
SPFSPRLDVRGLVCAPLGQSTPALTFQIDPGTCLALLGHRAADLSRVLDTLAGHLPCPAGDILVDGREVSALVPGGRGMG
LFSARDPLFAHLTVRQNLAFPLRARGLSRAAAAARVDEILALTGLDGQAARHPRDLDPEDSWRARLGRLLVFAPPMLLLD
DPFASLEPEGRRAMRQLLGRLMRARGLTMLLATRDREDALLLGGRIGILSGRALLQVGQAADLFDRPACDRVATAFGDAN
ALTGRVAWVEDDLARVRLASGAVVEAAAAGGLAADALCTLCIRPDRIATLFPTGRPSEGEEGDLPATLIALHHMGDHVRL
RFRLGDGQEVLVRRPPAQTLAGLVPGRPALLAWQPAHAVAFPFRAEIG

Specific function: Part of the ABC transporter complex PotABCD involved in spermidine/putrescine import. Responsible for energy coupling to the transport system [H]

COG id: COG3842

COG function: function code E; ABC-type spermidine/putrescine transport systems, ATPase components

Gene ontology:

Cell location: Cell inner membrane; Peripheral membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transporter domain [H]

Homologues:

Organism=Homo sapiens, GI116734710, Length=198, Percent_Identity=30.8080808080808, Blast_Score=84, Evalue=2e-16,
Organism=Homo sapiens, GI105990541, Length=177, Percent_Identity=29.9435028248588, Blast_Score=81, Evalue=2e-15,
Organism=Homo sapiens, GI150417984, Length=220, Percent_Identity=29.0909090909091, Blast_Score=75, Evalue=8e-14,
Organism=Homo sapiens, GI21536376, Length=193, Percent_Identity=26.9430051813472, Blast_Score=69, Evalue=8e-12,
Organism=Escherichia coli, GI87081791, Length=331, Percent_Identity=28.3987915407855, Blast_Score=130, Evalue=2e-31,
Organism=Escherichia coli, GI87082267, Length=319, Percent_Identity=29.7805642633229, Blast_Score=124, Evalue=9e-30,
Organism=Escherichia coli, GI1787370, Length=247, Percent_Identity=29.1497975708502, Blast_Score=105, Evalue=4e-24,
Organism=Escherichia coli, GI87081709, Length=217, Percent_Identity=28.5714285714286, Blast_Score=105, Evalue=6e-24,
Organism=Escherichia coli, GI1787712, Length=339, Percent_Identity=25.0737463126844, Blast_Score=103, Evalue=3e-23,
Organism=Escherichia coli, GI1790467, Length=316, Percent_Identity=25.3164556962025, Blast_Score=100, Evalue=1e-22,
Organism=Escherichia coli, GI1788761, Length=228, Percent_Identity=30.2631578947368, Blast_Score=94, Evalue=1e-20,
Organism=Escherichia coli, GI1788450, Length=217, Percent_Identity=30.8755760368664, Blast_Score=92, Evalue=5e-20,
Organism=Escherichia coli, GI1786253, Length=176, Percent_Identity=30.6818181818182, Blast_Score=87, Evalue=2e-18,
Organism=Escherichia coli, GI1789032, Length=215, Percent_Identity=25.1162790697674, Blast_Score=79, Evalue=4e-16,
Organism=Escherichia coli, GI1786398, Length=173, Percent_Identity=28.3236994219653, Blast_Score=75, Evalue=5e-15,
Organism=Escherichia coli, GI1786563, Length=194, Percent_Identity=28.3505154639175, Blast_Score=75, Evalue=6e-15,
Organism=Escherichia coli, GI1787029, Length=219, Percent_Identity=26.4840182648402, Blast_Score=75, Evalue=8e-15,
Organism=Escherichia coli, GI87081834, Length=195, Percent_Identity=26.6666666666667, Blast_Score=70, Evalue=3e-13,
Organism=Escherichia coli, GI1787089, Length=155, Percent_Identity=29.0322580645161, Blast_Score=65, Evalue=1e-11,
Organism=Escherichia coli, GI1788225, Length=239, Percent_Identity=25.1046025104602, Blast_Score=64, Evalue=1e-11,
Organism=Escherichia coli, GI48994943, Length=214, Percent_Identity=26.6355140186916, Blast_Score=64, Evalue=2e-11,
Organism=Caenorhabditis elegans, GI17565586, Length=188, Percent_Identity=29.7872340425532, Blast_Score=69, Evalue=3e-12,
Organism=Caenorhabditis elegans, GI71983523, Length=200, Percent_Identity=24.5, Blast_Score=68, Evalue=8e-12,
Organism=Caenorhabditis elegans, GI71983516, Length=200, Percent_Identity=24.5, Blast_Score=68, Evalue=8e-12,
Organism=Caenorhabditis elegans, GI71983510, Length=200, Percent_Identity=24.5, Blast_Score=68, Evalue=8e-12,
Organism=Caenorhabditis elegans, GI115533608, Length=209, Percent_Identity=28.2296650717703, Blast_Score=67, Evalue=2e-11,
Organism=Drosophila melanogaster, GI24666092, Length=196, Percent_Identity=27.0408163265306, Blast_Score=69, Evalue=4e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003439
- InterPro:   IPR017871
- InterPro:   IPR003593
- InterPro:   IPR008995
- InterPro:   IPR017879
- InterPro:   IPR005893
- InterPro:   IPR013611 [H]

Pfam domain/function: PF00005 ABC_tran; PF08402 TOBE_2 [H]

EC number: =3.6.3.31 [H]

Molecular weight: Translated: 39216; Mature: 39085

Theoretical pI: Translated: 8.17; Mature: 8.17

Prosite motif: PS50893 ABC_TRANSPORTER_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSPFSPRLDVRGLVCAPLGQSTPALTFQIDPGTCLALLGHRAADLSRVLDTLAGHLPCPA
CCCCCCCCCCCEEEEECCCCCCCEEEEEECCCHHHHHHHCCHHHHHHHHHHHHCCCCCCC
GDILVDGREVSALVPGGRGMGLFSARDPLFAHLTVRQNLAFPLRARGLSRAAAAARVDEI
CCEEECCCEEEEECCCCCCCCCCCCCCCEEEEEEECCCCCCCHHHCCHHHHHHHHHHHHH
LALTGLDGQAARHPRDLDPEDSWRARLGRLLVFAPPMLLLDDPFASLEPEGRRAMRQLLG
HEEECCCCHHHCCCCCCCCCHHHHHHHCCEEEECCCEEEECCCCCCCCCHHHHHHHHHHH
RLMRARGLTMLLATRDREDALLLGGRIGILSGRALLQVGQAADLFDRPACDRVATAFGDA
HHHHHCCCEEEEEECCCCCEEEECCEEEEECCHHHHHHCCHHHHHCCCCHHHHHHHHCCC
NALTGRVAWVEDDLARVRLASGAVVEAAAAGGLAADALCTLCIRPDRIATLFPTGRPSEG
CCCEEEEEEEHHHHHHHHHHCCCEEEHHHCCCHHHHHHHHHEECCCCEEEECCCCCCCCC
EEGDLPATLIALHHMGDHVRLRFRLGDGQEVLVRRPPAQTLAGLVPGRPALLAWQPAHAV
CCCCCCHHHHHHHHCCCEEEEEEEECCCCEEEEECCCHHHHHHCCCCCCEEEEECCCHHE
AFPFRAEIG
ECCEECCCC
>Mature Secondary Structure 
SPFSPRLDVRGLVCAPLGQSTPALTFQIDPGTCLALLGHRAADLSRVLDTLAGHLPCPA
CCCCCCCCCCEEEEECCCCCCCEEEEEECCCHHHHHHHCCHHHHHHHHHHHHCCCCCCC
GDILVDGREVSALVPGGRGMGLFSARDPLFAHLTVRQNLAFPLRARGLSRAAAAARVDEI
CCEEECCCEEEEECCCCCCCCCCCCCCCEEEEEEECCCCCCCHHHCCHHHHHHHHHHHHH
LALTGLDGQAARHPRDLDPEDSWRARLGRLLVFAPPMLLLDDPFASLEPEGRRAMRQLLG
HEEECCCCHHHCCCCCCCCCHHHHHHHCCEEEECCCEEEECCCCCCCCCHHHHHHHHHHH
RLMRARGLTMLLATRDREDALLLGGRIGILSGRALLQVGQAADLFDRPACDRVATAFGDA
HHHHHCCCEEEEEECCCCCEEEECCEEEEECCHHHHHHCCHHHHHCCCCHHHHHHHHCCC
NALTGRVAWVEDDLARVRLASGAVVEAAAAGGLAADALCTLCIRPDRIATLFPTGRPSEG
CCCEEEEEEEHHHHHHHHHHCCCEEEHHHCCCHHHHHHHHHEECCCCEEEECCCCCCCCC
EEGDLPATLIALHHMGDHVRLRFRLGDGQEVLVRRPPAQTLAGLVPGRPALLAWQPAHAV
CCCCCCHHHHHHHHCCCEEEEEEEECCCCEEEEECCCHHHHHHCCCCCCEEEEECCCHHE
AFPFRAEIG
ECCEECCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11214968 [H]