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The map label for this gene is yphD [H]

Identifier: 162147321

GI number: 162147321

Start: 1536799

End: 1537419

Strand: Reverse

Name: yphD [H]

Synonym: GDI_1527

Alternate gene names: 162147321

Gene position: 1537419-1536799 (Counterclockwise)

Preceding gene: 162147326

Following gene: 162147320

Centisome position: 38.98

GC content: 68.28

Gene sequence:

>621_bases
GTGGCGCTGGTGCCGTCCTTCATTTCGACACTGGCGGTGGGCGGCATCGCCCTGTCGGTGGCCCAGTTCGCCTCGGGCCA
GCGGGCGCTGCACATGGATGCCGAAATGCGCCGCCATGCCTTCGGCTGGATGGTGGGGCGCAGCGCGGGCGTGCCGCACG
AATTGCTGGTCGCCCTCGTCCCTGGCGCCATCGCCTGGTTCGTCCAGACGCGGATGACGGCGGGGCGTATCTTCAAGGCG
ATCGGCACGGCCGAACCGGTGGCGGTCGCGTCGGGCATCCGCGTCGGCCGCTACAAGATCCTGGCCTTCGCGCTGTCCGG
CATGTTCGCCGCCATCGCCGGGGTGATGTTCTCGGTCCGGCTGTCGGGCGGATCGCCGACCCTGGCGGAGGGGTTTCTGC
TGCCGGCGATCGTGGCCGTGCTGGTGGGCGGCACGCCACTGACCGAGGGCGTGGGCGGCGTGCTGAACACGCTGATCGGC
GCGCTGATCGTGGCGGTGGTACGCGCCAGCATGCTCTATCTGAACATTCCCGCGACGGGACAGCAGATTTTCTTCGGTCT
TGTGCTGATCACCGCCATCGCGACCACCATCGACCGGTCGAAGATGCGCGTCGTCAAATAG

Upstream 100 bases:

>100_bases
GGCCAGCGCCTGGCCGATCACGCGGCCCGCGCCGGTCACGACGTTATAGACCCCGGCCGGCAGGCCCGCCTGCTGCAGGA
TATCCGCCAGAATCAGCGTC

Downstream 100 bases:

>100_bases
GTGACGAAGGATATCATGGATACGATGCGCGCGGCCGTCCTGGTCGCCCCCCACAGGTTCGAAGTCAGGGCCGTGCTGCT
TCCCCCGGTCGGCCCCGACG

Product: permease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 206; Mature: 205

Protein sequence:

>206_residues
MALVPSFISTLAVGGIALSVAQFASGQRALHMDAEMRRHAFGWMVGRSAGVPHELLVALVPGAIAWFVQTRMTAGRIFKA
IGTAEPVAVASGIRVGRYKILAFALSGMFAAIAGVMFSVRLSGGSPTLAEGFLLPAIVAVLVGGTPLTEGVGGVLNTLIG
ALIVAVVRASMLYLNIPATGQQIFFGLVLITAIATTIDRSKMRVVK

Sequences:

>Translated_206_residues
MALVPSFISTLAVGGIALSVAQFASGQRALHMDAEMRRHAFGWMVGRSAGVPHELLVALVPGAIAWFVQTRMTAGRIFKA
IGTAEPVAVASGIRVGRYKILAFALSGMFAAIAGVMFSVRLSGGSPTLAEGFLLPAIVAVLVGGTPLTEGVGGVLNTLIG
ALIVAVVRASMLYLNIPATGQQIFFGLVLITAIATTIDRSKMRVVK
>Mature_205_residues
ALVPSFISTLAVGGIALSVAQFASGQRALHMDAEMRRHAFGWMVGRSAGVPHELLVALVPGAIAWFVQTRMTAGRIFKAI
GTAEPVAVASGIRVGRYKILAFALSGMFAAIAGVMFSVRLSGGSPTLAEGFLLPAIVAVLVGGTPLTEGVGGVLNTLIGA
LIVAVVRASMLYLNIPATGQQIFFGLVLITAIATTIDRSKMRVVK

Specific function: Probably part of the binding-protein-dependent transport system yphDEF. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG1172

COG function: function code G; Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the binding-protein-dependent transport system permease family. AraH/rbsC subfamily [H]

Homologues:

Organism=Escherichia coli, GI1788896, Length=194, Percent_Identity=31.4432989690722, Blast_Score=91, Evalue=5e-20,
Organism=Escherichia coli, GI1790191, Length=199, Percent_Identity=31.6582914572864, Blast_Score=90, Evalue=1e-19,
Organism=Escherichia coli, GI1789992, Length=127, Percent_Identity=40.1574803149606, Blast_Score=79, Evalue=3e-16,
Organism=Escherichia coli, GI145693152, Length=200, Percent_Identity=31.5, Blast_Score=79, Evalue=3e-16,
Organism=Escherichia coli, GI1790524, Length=150, Percent_Identity=32.6666666666667, Blast_Score=75, Evalue=4e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001851 [H]

Pfam domain/function: PF02653 BPD_transp_2 [H]

EC number: NA

Molecular weight: Translated: 21347; Mature: 21216

Theoretical pI: Translated: 11.88; Mature: 11.88

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
4.4 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.9 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MALVPSFISTLAVGGIALSVAQFASGQRALHMDAEMRRHAFGWMVGRSAGVPHELLVALV
CCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEHHHHHHHHHHHHHHCCCCCCCHHHHHHHH
PGAIAWFVQTRMTAGRIFKAIGTAEPVAVASGIRVGRYKILAFALSGMFAAIAGVMFSVR
HHHHHHHHHHHHHHHHHHHHHCCCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHEE
LSGGSPTLAEGFLLPAIVAVLVGGTPLTEGVGGVLNTLIGALIVAVVRASMLYLNIPATG
ECCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCH
QQIFFGLVLITAIATTIDRSKMRVVK
HHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
ALVPSFISTLAVGGIALSVAQFASGQRALHMDAEMRRHAFGWMVGRSAGVPHELLVALV
CCHHHHHHHHHHHHHHHHHHHHHCCCCEEEHHHHHHHHHHHHHHCCCCCCCHHHHHHHH
PGAIAWFVQTRMTAGRIFKAIGTAEPVAVASGIRVGRYKILAFALSGMFAAIAGVMFSVR
HHHHHHHHHHHHHHHHHHHHHCCCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHEE
LSGGSPTLAEGFLLPAIVAVLVGGTPLTEGVGGVLNTLIGALIVAVVRASMLYLNIPATG
ECCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCH
QQIFFGLVLITAIATTIDRSKMRVVK
HHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9205837; 9278503 [H]