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The map label for this gene is yraA [H]

Identifier: 162147317

GI number: 162147317

Start: 1533555

End: 1534115

Strand: Reverse

Name: yraA [H]

Synonym: GDI_1523

Alternate gene names: 162147317

Gene position: 1534115-1533555 (Counterclockwise)

Preceding gene: 162147318

Following gene: 162147316

Centisome position: 38.9

GC content: 65.95

Gene sequence:

>561_bases
ATGGGAATGTTGGATGGCAGAACGATTGCCGTACTGGCCACGGACGGCGTCGAAGAAGTCGAACTGACGCAACCGGTCGA
GGCGCTGCGCGATGCGGGGGCGCGTACCGTCCTGGTGTCGCCGAAGACCGGACGGATCCAGGCCATGAAGGAGGATGTCA
ATCCGGCTGGCCACTATGACGTCGATCGCCCGGTCGCCCAGGCGGCGGCGTCGGAATTCGACGGGCTGGTCCTGCCGGGG
GGCACCACGAATCCGGATCATCTGCGCATCGATGCGGAATCCGTGCGCTTCGTGCGGGAATTCGTGGAGTCCGGCAAGCC
CATGGCCGCCATATGCCACGGACCATGGACGCTGATCGACGCAGGCGGCGTGGCGGGCCACCGCATGACGTCATGGCCGT
CCCTGCGGACCGACCTGACCAATGCGGGCGCCCAATGGGTGAACGAGACGGTCGTCACGGACGGAACGCTGGTCACGTCA
CGCAATCCCGGTGACCTGAAGGCGTTCTGTTCGGCCATGATCACGCTGTTCGCGGACACGCCGGCGGCGCACGCGCTGTA
A

Upstream 100 bases:

>100_bases
CCGATGTGAGGGAACATGGCCCCCGAGAGAGGCGCTGACACCAGTCAGGCCGGGCGGGGCGTGAAAGTCCCACCGAACCG
ATCAAGGAAGGACCACGACA

Downstream 100 bases:

>100_bases
CCGGCGCCGCCGGCGCATCCAATCCGAACCATAAAGTGTTAACGGGATTCCCTCCTGCGGAGTTGTCCGATGCTGACCCT
TCTCGTGATCATCCTCATCA

Product: protease protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 186; Mature: 185

Protein sequence:

>186_residues
MGMLDGRTIAVLATDGVEEVELTQPVEALRDAGARTVLVSPKTGRIQAMKEDVNPAGHYDVDRPVAQAAASEFDGLVLPG
GTTNPDHLRIDAESVRFVREFVESGKPMAAICHGPWTLIDAGGVAGHRMTSWPSLRTDLTNAGAQWVNETVVTDGTLVTS
RNPGDLKAFCSAMITLFADTPAAHAL

Sequences:

>Translated_186_residues
MGMLDGRTIAVLATDGVEEVELTQPVEALRDAGARTVLVSPKTGRIQAMKEDVNPAGHYDVDRPVAQAAASEFDGLVLPG
GTTNPDHLRIDAESVRFVREFVESGKPMAAICHGPWTLIDAGGVAGHRMTSWPSLRTDLTNAGAQWVNETVVTDGTLVTS
RNPGDLKAFCSAMITLFADTPAAHAL
>Mature_185_residues
GMLDGRTIAVLATDGVEEVELTQPVEALRDAGARTVLVSPKTGRIQAMKEDVNPAGHYDVDRPVAQAAASEFDGLVLPGG
TTNPDHLRIDAESVRFVREFVESGKPMAAICHGPWTLIDAGGVAGHRMTSWPSLRTDLTNAGAQWVNETVVTDGTLVTSR
NPGDLKAFCSAMITLFADTPAAHAL

Specific function: Functions in the protection against aldehyde-stress, possibly by degrading damaged proteins [H]

COG id: COG0693

COG function: function code R; Putative intracellular protease/amidase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 PfpI endopeptidase domain [H]

Homologues:

Organism=Escherichia coli, GI87082219, Length=172, Percent_Identity=39.5348837209302, Blast_Score=124, Evalue=3e-30,
Organism=Escherichia coli, GI87081736, Length=126, Percent_Identity=32.5396825396825, Blast_Score=61, Evalue=6e-11,
Organism=Caenorhabditis elegans, GI17531319, Length=188, Percent_Identity=29.2553191489362, Blast_Score=64, Evalue=4e-11,
Organism=Drosophila melanogaster, GI28571932, Length=163, Percent_Identity=31.2883435582822, Blast_Score=78, Evalue=4e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006286
- InterPro:   IPR002818 [H]

Pfam domain/function: PF01965 DJ-1_PfpI [H]

EC number: NA

Molecular weight: Translated: 19691; Mature: 19560

Theoretical pI: Translated: 4.69; Mature: 4.69

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGMLDGRTIAVLATDGVEEVELTQPVEALRDAGARTVLVSPKTGRIQAMKEDVNPAGHYD
CCCCCCCEEEEEEECCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHCCCCCCCCC
VDRPVAQAAASEFDGLVLPGGTTNPDHLRIDAESVRFVREFVESGKPMAAICHGPWTLID
CCHHHHHHHHHHCCCEEECCCCCCCCEEEECHHHHHHHHHHHHCCCCEEEEECCCEEEEE
AGGVAGHRMTSWPSLRTDLTNAGAQWVNETVVTDGTLVTSRNPGDLKAFCSAMITLFADT
CCCCCCCCCCCCCCHHHHHHHHHHHHHCCEEECCCEEEECCCCCHHHHHHHHHHHHHCCC
PAAHAL
CHHCCC
>Mature Secondary Structure 
GMLDGRTIAVLATDGVEEVELTQPVEALRDAGARTVLVSPKTGRIQAMKEDVNPAGHYD
CCCCCCEEEEEEECCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHCCCCCCCCC
VDRPVAQAAASEFDGLVLPGGTTNPDHLRIDAESVRFVREFVESGKPMAAICHGPWTLID
CCHHHHHHHHHHCCCEEECCCCCCCCEEEECHHHHHHHHHHHHCCCCEEEEECCCEEEEE
AGGVAGHRMTSWPSLRTDLTNAGAQWVNETVVTDGTLVTSRNPGDLKAFCSAMITLFADT
CCCCCCCCCCCCCCHHHHHHHHHHHHHCCEEECCCEEEECCCCCHHHHHHHHHHHHHCCC
PAAHAL
CHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9141695; 9384377; 10568751 [H]