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The map label for this gene is yhcM [H]

Identifier: 162147209

GI number: 162147209

Start: 1415015

End: 1416256

Strand: Direct

Name: yhcM [H]

Synonym: GDI_1414

Alternate gene names: 162147209

Gene position: 1415015-1416256 (Clockwise)

Preceding gene: 162147204

Following gene: 162147210

Centisome position: 35.88

GC content: 68.44

Gene sequence:

>1242_bases
ATGGTTGCTGGCGCTATCGGCGTTGTTATGGAAGCCGCCCTTTCGCTCTTCGCCTCGGACCTGCATCTTCCCCCCGGAAC
GGGACCCCTGGCCGCGTACCAGGCCCGGGTGAATGCGGGCCTGCTCTCCGCCGATCCCGAACAGGCCAAGGCCGCGGCGC
GTCTGGACCGGCTGTGGCGGGAACTGCCCGGCTATCACCCCGTGGTGCGCCGGCCGCCGCCGCAGGGGATTTTCAGCCAC
GGGCTGCTGGGCAAGGGGCTGGGCAGCCTGAAATCCCGCCTCGGCCTGGCCGGCGGTGCCGCCCAACCGCCGCGCCCGCG
CGGCGTGTACCTGGTGGGGCAGGTCGGGCGCGGCAAGACCATGCTGATGGACCTGTTCTTCGAGCTGGCCCCGGTGGAAC
ACAAGAAACGGGTGCATTTCCATCGTTTCATGCAGGACGTCCACCAGCGCCTGCACGCCATGAAGATCGCCCATCCGGAC
CTGACCGATCCGATCCCGCCGCTGGCCCACGCCATCGCGGACGAGGCCTGGCTGCTGTGCTTCGACGAATTCCAGGTGAA
CGACATCGCCGACGCGATGGTCCTGGGCCGCCTGTTCGAATATCTGTTCGCCGAGGGCGTGGTCGTGGTCGCGACCTCGA
ACACCGAGCCCAAGGATCTGTTCCAGAACCGGCCGGGCGCGGACGCCTTCCGCCCCTTCATCGCCATCATCCAGCGCGAG
GTCGACACGGTGGAACTGGATTCCCCGCGCGATTACCGCAGGGGCGGCATGCGCGGCATGGCGACCTGGATCGTCCCCCC
CGGTCCCGACGCGGAGCTGGAGTTGGATTCGCTGTTCATGCGCCTGGCCGACGGCGCCCCGGTGCGCCCGGTGAAGCTGG
AGGTGATGGGCCGGACGTTCGCGGTGCCGGTGGCGGCCGGTCCGGTCGCGCGCTTCACCTTTCCCGATCTGTGCGGCCGG
CCGCTGGGCGCGGGCGACTATCTGGCCCTGGCCAACCGCTTCGCGGCGCTGGTCCTGGACGACGTGCCGCGCCTGGGCCC
CGACAATTTCGATGTCGCCCGCCGTTTCATCGTGCTGATCGATACGCTCTACGAACAGAAGGTCAAGCTGTTCGCCTCGG
CCGAGGACCAGCCGGACGCCATCTACCAGAAGGGTGACGGCGCGCAGGCTTTCGAACGTACCGCATCGCGCCTGGAAGAA
ATGCAGAGCGCTGCCTACCTGGACCTGCCGCACCTGTCCTGA

Upstream 100 bases:

>100_bases
CAACATCCTTGTTTCGTGGTCGTGAATACGGTTTCAAGTTCACCAGATAGAGAGCAGGCCTGTCACGACACGGTTTGGCG
ACCGCACGCTCTTGCTGAGA

Downstream 100 bases:

>100_bases
CCGGGGCGCCGGCCGCCCGACCGCCCGGGGGCGCCGTTTCGCCATTCCTGCGCATGTTCCTTACGGTCACGGCATCGTGA
CGGTTATGGCGAGGGTGTGA

Product: ATPase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 413; Mature: 413

Protein sequence:

>413_residues
MVAGAIGVVMEAALSLFASDLHLPPGTGPLAAYQARVNAGLLSADPEQAKAAARLDRLWRELPGYHPVVRRPPPQGIFSH
GLLGKGLGSLKSRLGLAGGAAQPPRPRGVYLVGQVGRGKTMLMDLFFELAPVEHKKRVHFHRFMQDVHQRLHAMKIAHPD
LTDPIPPLAHAIADEAWLLCFDEFQVNDIADAMVLGRLFEYLFAEGVVVVATSNTEPKDLFQNRPGADAFRPFIAIIQRE
VDTVELDSPRDYRRGGMRGMATWIVPPGPDAELELDSLFMRLADGAPVRPVKLEVMGRTFAVPVAAGPVARFTFPDLCGR
PLGAGDYLALANRFAALVLDDVPRLGPDNFDVARRFIVLIDTLYEQKVKLFASAEDQPDAIYQKGDGAQAFERTASRLEE
MQSAAYLDLPHLS

Sequences:

>Translated_413_residues
MVAGAIGVVMEAALSLFASDLHLPPGTGPLAAYQARVNAGLLSADPEQAKAAARLDRLWRELPGYHPVVRRPPPQGIFSH
GLLGKGLGSLKSRLGLAGGAAQPPRPRGVYLVGQVGRGKTMLMDLFFELAPVEHKKRVHFHRFMQDVHQRLHAMKIAHPD
LTDPIPPLAHAIADEAWLLCFDEFQVNDIADAMVLGRLFEYLFAEGVVVVATSNTEPKDLFQNRPGADAFRPFIAIIQRE
VDTVELDSPRDYRRGGMRGMATWIVPPGPDAELELDSLFMRLADGAPVRPVKLEVMGRTFAVPVAAGPVARFTFPDLCGR
PLGAGDYLALANRFAALVLDDVPRLGPDNFDVARRFIVLIDTLYEQKVKLFASAEDQPDAIYQKGDGAQAFERTASRLEE
MQSAAYLDLPHLS
>Mature_413_residues
MVAGAIGVVMEAALSLFASDLHLPPGTGPLAAYQARVNAGLLSADPEQAKAAARLDRLWRELPGYHPVVRRPPPQGIFSH
GLLGKGLGSLKSRLGLAGGAAQPPRPRGVYLVGQVGRGKTMLMDLFFELAPVEHKKRVHFHRFMQDVHQRLHAMKIAHPD
LTDPIPPLAHAIADEAWLLCFDEFQVNDIADAMVLGRLFEYLFAEGVVVVATSNTEPKDLFQNRPGADAFRPFIAIIQRE
VDTVELDSPRDYRRGGMRGMATWIVPPGPDAELELDSLFMRLADGAPVRPVKLEVMGRTFAVPVAAGPVARFTFPDLCGR
PLGAGDYLALANRFAALVLDDVPRLGPDNFDVARRFIVLIDTLYEQKVKLFASAEDQPDAIYQKGDGAQAFERTASRLEE
MQSAAYLDLPHLS

Specific function: Unknown

COG id: COG1485

COG function: function code R; Predicted ATPase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the AFG1 ATPase family [H]

Homologues:

Organism=Homo sapiens, GI21918872, Length=424, Percent_Identity=38.9150943396226, Blast_Score=261, Evalue=8e-70,
Organism=Escherichia coli, GI1789627, Length=388, Percent_Identity=36.8556701030928, Blast_Score=223, Evalue=2e-59,
Organism=Caenorhabditis elegans, GI17505769, Length=420, Percent_Identity=35.9523809523809, Blast_Score=251, Evalue=5e-67,
Organism=Saccharomyces cerevisiae, GI6320783, Length=387, Percent_Identity=36.4341085271318, Blast_Score=198, Evalue=1e-51,
Organism=Drosophila melanogaster, GI20129913, Length=456, Percent_Identity=36.1842105263158, Blast_Score=256, Evalue=3e-68,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005654 [H]

Pfam domain/function: PF03969 AFG1_ATPase [H]

EC number: NA

Molecular weight: Translated: 45192; Mature: 45192

Theoretical pI: Translated: 6.44; Mature: 6.44

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVAGAIGVVMEAALSLFASDLHLPPGTGPLAAYQARVNAGLLSADPEQAKAAARLDRLWR
CCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHH
ELPGYHPVVRRPPPQGIFSHGLLGKGLGSLKSRLGLAGGAAQPPRPRGVYLVGQVGRGKT
HCCCCCCCCCCCCCCCHHHCCCHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEECCCCHH
MLMDLFFELAPVEHKKRVHFHRFMQDVHQRLHAMKIAHPDLTDPIPPLAHAIADEAWLLC
HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHCCCCEEEE
FDEFQVNDIADAMVLGRLFEYLFAEGVVVVATSNTEPKDLFQNRPGADAFRPFIAIIQRE
ECCCCHHHHHHHHHHHHHHHHHHHCCEEEEEECCCCHHHHHCCCCCCHHHHHHHHHHHHC
VDTVELDSPRDYRRGGMRGMATWIVPPGPDAELELDSLFMRLADGAPVRPVKLEVMGRTF
CCEEECCCCHHHHHCCCCCCEEEEECCCCCCCCCHHHHHHHHHCCCCCCCEEEEECCCEE
AVPVAAGPVARFTFPDLCGRPLGAGDYLALANRFAALVLDDVPRLGPDNFDVARRFIVLI
EEEECCCCCCCCCCHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHH
DTLYEQKVKLFASAEDQPDAIYQKGDGAQAFERTASRLEEMQSAAYLDLPHLS
HHHHHHHHHHHHCCCCCCCHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCC
>Mature Secondary Structure
MVAGAIGVVMEAALSLFASDLHLPPGTGPLAAYQARVNAGLLSADPEQAKAAARLDRLWR
CCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHH
ELPGYHPVVRRPPPQGIFSHGLLGKGLGSLKSRLGLAGGAAQPPRPRGVYLVGQVGRGKT
HCCCCCCCCCCCCCCCHHHCCCHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEECCCCHH
MLMDLFFELAPVEHKKRVHFHRFMQDVHQRLHAMKIAHPDLTDPIPPLAHAIADEAWLLC
HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHCCCCEEEE
FDEFQVNDIADAMVLGRLFEYLFAEGVVVVATSNTEPKDLFQNRPGADAFRPFIAIIQRE
ECCCCHHHHHHHHHHHHHHHHHHHCCEEEEEECCCCHHHHHCCCCCCHHHHHHHHHHHHC
VDTVELDSPRDYRRGGMRGMATWIVPPGPDAELELDSLFMRLADGAPVRPVKLEVMGRTF
CCEEECCCCHHHHHCCCCCCEEEEECCCCCCCCCHHHHHHHHHCCCCCCCEEEEECCCEE
AVPVAAGPVARFTFPDLCGRPLGAGDYLALANRFAALVLDDVPRLGPDNFDVARRFIVLI
EEEECCCCCCCCCCHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHH
DTLYEQKVKLFASAEDQPDAIYQKGDGAQAFERTASRLEEMQSAAYLDLPHLS
HHHHHHHHHHHHCCCCCCCHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]