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The map label for this gene is rbfA

Identifier: 162147161

GI number: 162147161

Start: 1369629

End: 1370039

Strand: Direct

Name: rbfA

Synonym: GDI_1366

Alternate gene names: 162147161

Gene position: 1369629-1370039 (Clockwise)

Preceding gene: 162147160

Following gene: 162147163

Centisome position: 34.73

GC content: 70.56

Gene sequence:

>411_bases
GTGAACACGGCGGGGCCGGCGGGGAAACTCGCCGGCCATGCTGCTTCCGGGCCCACGCAACGCCAGTTGCGCGTGGGCGA
GGAAGTGCGCCGCATGCTGGCCGACCTGTTCGCCCGCACGGAATTCCGCGATCCCGAGCTGGTCGATGTCCGCATCACGG
TGACCGAGGTCCGGATCTCGCCCGACCTGAAGCACGCCACCGCCTTCGTCGCCCGGCTGGGCCGCAGCGACGTCGAAACC
CTGCTGCCGGCGCTCAAGCGCGTGGCGCCGTTCCTGCGCTCGCGCCTGTCCACCGGCCTGCGCCTGCGGGGGGTGCCGGA
AATCCATTTCCAGCCGGACACCGCGCTGGATTACGCGATGGAAGTCGATGCGCTGCTGCGGCAGCCGGACGTCGCGCGGG
ATCTGGATTGA

Upstream 100 bases:

>100_bases
TGTCCTTCGCGGGTTACAACGACCTGCGCGAAGGCGACATGGTCGAGTGCTACGAGATGGAACTGGTTCCCGCATGAGCC
GTAACGCCTCACGCGGCAAG

Downstream 100 bases:

>100_bases
GCCTGAGCGGGCCTCGACTTACCCCGGCACCGACTACTTCCCCTCCCCGACCAGCAGAACCCCCGGCGTCCGACGCACGG
TCCGGGCCGCGTCATGCAGC

Product: ribosome-binding factor A

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 136; Mature: 136

Protein sequence:

>136_residues
MNTAGPAGKLAGHAASGPTQRQLRVGEEVRRMLADLFARTEFRDPELVDVRITVTEVRISPDLKHATAFVARLGRSDVET
LLPALKRVAPFLRSRLSTGLRLRGVPEIHFQPDTALDYAMEVDALLRQPDVARDLD

Sequences:

>Translated_136_residues
MNTAGPAGKLAGHAASGPTQRQLRVGEEVRRMLADLFARTEFRDPELVDVRITVTEVRISPDLKHATAFVARLGRSDVET
LLPALKRVAPFLRSRLSTGLRLRGVPEIHFQPDTALDYAMEVDALLRQPDVARDLD
>Mature_136_residues
MNTAGPAGKLAGHAASGPTQRQLRVGEEVRRMLADLFARTEFRDPELVDVRITVTEVRISPDLKHATAFVARLGRSDVET
LLPALKRVAPFLRSRLSTGLRLRGVPEIHFQPDTALDYAMEVDALLRQPDVARDLD

Specific function: Associates with free 30S ribosomal subunits (but not with 30S subunits that are part of 70S ribosomes or polysomes). Essential for efficient processing of 16S rRNA. May interact with the 5'-terminal helix region of 16S rRNA

COG id: COG0858

COG function: function code J; Ribosome-binding factor A

Gene ontology:

Cell location: Cytoplasm (Potential)

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rbfA family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RBFA_GLUDA (A9HF21)

Other databases:

- EMBL:   AM889285
- EMBL:   CP001189
- RefSeq:   YP_001601622.1
- RefSeq:   YP_002276446.1
- ProteinModelPortal:   A9HF21
- SMR:   A9HF21
- GeneID:   5792125
- GeneID:   6975498
- GenomeReviews:   AM889285_GR
- GenomeReviews:   CP001189_GR
- KEGG:   gdj:Gdia_2071
- HOGENOM:   HBG751055
- OMA:   LRQMKYM
- ProtClustDB:   PRK00521
- GO:   GO:0005737
- HAMAP:   MF_00003
- InterPro:   IPR015946
- InterPro:   IPR000238
- InterPro:   IPR020053
- Gene3D:   G3DSA:3.30.300.20
- ProDom:   PD007327
- TIGRFAMs:   TIGR00082

Pfam domain/function: PF02033 RBFA; SSF89919 Rib_bd_factA

EC number: NA

Molecular weight: Translated: 15067; Mature: 15067

Theoretical pI: Translated: 9.22; Mature: 9.22

Prosite motif: PS01319 RBFA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNTAGPAGKLAGHAASGPTQRQLRVGEEVRRMLADLFARTEFRDPELVDVRITVTEVRIS
CCCCCCCCHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEEEEEEC
PDLKHATAFVARLGRSDVETLLPALKRVAPFLRSRLSTGLRLRGVPEIHFQPDTALDYAM
CCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCEECCCCCEEECCCHHHHHHH
EVDALLRQPDVARDLD
HHHHHHCCCCCCCCCC
>Mature Secondary Structure
MNTAGPAGKLAGHAASGPTQRQLRVGEEVRRMLADLFARTEFRDPELVDVRITVTEVRIS
CCCCCCCCHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEEEEEEC
PDLKHATAFVARLGRSDVETLLPALKRVAPFLRSRLSTGLRLRGVPEIHFQPDTALDYAM
CCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCEECCCCCEEECCCHHHHHHH
EVDALLRQPDVARDLD
HHHHHHCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA