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The map label for this gene is yfkH [H]

Identifier: 162147146

GI number: 162147146

Start: 1350765

End: 1351730

Strand: Reverse

Name: yfkH [H]

Synonym: GDI_1351

Alternate gene names: 162147146

Gene position: 1351730-1350765 (Counterclockwise)

Preceding gene: 162147148

Following gene: 162147144

Centisome position: 34.27

GC content: 66.15

Gene sequence:

>966_bases
ATGCAGGCCAACAGCCACTTCTCCCCGGCCGGTAACGGCCCCACCCCGTGCCCCTTTCCCTCGCGGTCCATGTTGCGGCA
GATGTGGAAGCCGGTTCTGGGCCGGATGGCGCGCAATCTGTCGTCCGACCAGATCACCCTGGCGGCGGCAGGATGCGCCT
TCTATGCCACCCTGTCACTGTTTCCGGCGATCAGCACCCTGATTTCGATCTACGGACTGATGTTCGACCCCGATACGGTC
GAGCCGCAGATGGACGTGCTGCGCCATCTGCTGCCGCCCTCGGCCTTCACCCTGATCGACGAGCGCATCCATACCCTGGT
GGCTGAGCCGCATTCGTCGCTGACGCTGAACCTGATCCTGTCCACCACCATCACGCTGTGGTCGGCGTCGGCGGCGACGC
GGTCGATCATCTCGGCCGTCAATATCGCCTATGACACGCGCGAGACGCGCGGGTTCGTGCAGTTCCACCTGATGGCGCTG
GGCATGACCCTGTGCGCGATCTGCGGTGCCGTCCTGACCCTGAGCGTGCTGGTGGCGCTGCCGGTCCTGATCGATTTCGT
CCCGGCGCGGCTGGGCCTGGCCCCGCCGCCCTGGTCGGTCGAACTGCTGGTGCAGACGGGCGGCCCAGCGCTGATGCTGC
TGTTCGTGCTGGCCGCGTGCTCGCTGCTCTACCGTTTCAGCCCCAATCGCAGGATCGTACACTGGATCTGCATCCTGCCG
GGGTCCTGCACCGCCACGCTGATCTGGATCGTCTCGTCCATCGGGTTCTCGTACTACGTCAGCACGATCGCCAGCTACAA
CGCCACCTATGGCCCGCTGGGCGCGGTGGTCGCGACGATGATGTGGTTCTTCGTCACCGCCTACGTCATCCTGCTGGGCG
CCGAACTGAATGCCGGGCTGGAGGCGGAGATGGAACTGCGCCCGAGCGAGGGCGATGCCGGGCAGCGCCCCAGGCCAGGC
GAGTGA

Upstream 100 bases:

>100_bases
GGCACGTGCGTTGTTGCGTGGAGAGCGCATATGAGGGCAAACCACTTTGGGCGCAACAGAAAAATCGACCCGTGCGCATG
TTTTTCGTTAGGTAGGGGTC

Downstream 100 bases:

>100_bases
GAGGCTGAAGCCGGTCAGCGCCCGGCGTGATGCGCGACGCGACGGGGCGCGCCCGGCGCGGCGGCGGCGATTGCGTCGGC
GCTGGTATCCGTGGATTCGG

Product: ribonuclease protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 321; Mature: 321

Protein sequence:

>321_residues
MQANSHFSPAGNGPTPCPFPSRSMLRQMWKPVLGRMARNLSSDQITLAAAGCAFYATLSLFPAISTLISIYGLMFDPDTV
EPQMDVLRHLLPPSAFTLIDERIHTLVAEPHSSLTLNLILSTTITLWSASAATRSIISAVNIAYDTRETRGFVQFHLMAL
GMTLCAICGAVLTLSVLVALPVLIDFVPARLGLAPPPWSVELLVQTGGPALMLLFVLAACSLLYRFSPNRRIVHWICILP
GSCTATLIWIVSSIGFSYYVSTIASYNATYGPLGAVVATMMWFFVTAYVILLGAELNAGLEAEMELRPSEGDAGQRPRPG
E

Sequences:

>Translated_321_residues
MQANSHFSPAGNGPTPCPFPSRSMLRQMWKPVLGRMARNLSSDQITLAAAGCAFYATLSLFPAISTLISIYGLMFDPDTV
EPQMDVLRHLLPPSAFTLIDERIHTLVAEPHSSLTLNLILSTTITLWSASAATRSIISAVNIAYDTRETRGFVQFHLMAL
GMTLCAICGAVLTLSVLVALPVLIDFVPARLGLAPPPWSVELLVQTGGPALMLLFVLAACSLLYRFSPNRRIVHWICILP
GSCTATLIWIVSSIGFSYYVSTIASYNATYGPLGAVVATMMWFFVTAYVILLGAELNAGLEAEMELRPSEGDAGQRPRPG
E
>Mature_321_residues
MQANSHFSPAGNGPTPCPFPSRSMLRQMWKPVLGRMARNLSSDQITLAAAGCAFYATLSLFPAISTLISIYGLMFDPDTV
EPQMDVLRHLLPPSAFTLIDERIHTLVAEPHSSLTLNLILSTTITLWSASAATRSIISAVNIAYDTRETRGFVQFHLMAL
GMTLCAICGAVLTLSVLVALPVLIDFVPARLGLAPPPWSVELLVQTGGPALMLLFVLAACSLLYRFSPNRRIVHWICILP
GSCTATLIWIVSSIGFSYYVSTIASYNATYGPLGAVVATMMWFFVTAYVILLGAELNAGLEAEMELRPSEGDAGQRPRPG
E

Specific function: 3' To 5' Exoribonuclease Necessary For 3'Maturation Of tRNA Molecules. [C]

COG id: COG1295

COG function: function code S; Predicted membrane protein

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR017039
- InterPro:   IPR004664 [H]

Pfam domain/function: PF03631 Ribonuclease_BN [H]

EC number: 3.1.-.- [C]

Molecular weight: Translated: 34722; Mature: 34722

Theoretical pI: Translated: 6.77; Mature: 6.77

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.2 %Cys     (Translated Protein)
3.7 %Met     (Translated Protein)
5.9 %Cys+Met (Translated Protein)
2.2 %Cys     (Mature Protein)
3.7 %Met     (Mature Protein)
5.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQANSHFSPAGNGPTPCPFPSRSMLRQMWKPVLGRMARNLSSDQITLAAAGCAFYATLSL
CCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEHHHHHHHHHHH
FPAISTLISIYGLMFDPDTVEPQMDVLRHLLPPSAFTLIDERIHTLVAEPHSSLTLNLIL
HHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCEEEEHHH
STTITLWSASAATRSIISAVNIAYDTRETRGFVQFHLMALGMTLCAICGAVLTLSVLVAL
HHHHHHHCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
PVLIDFVPARLGLAPPPWSVELLVQTGGPALMLLFVLAACSLLYRFSPNRRIVHWICILP
HHHHHHHHHHCCCCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHCCCCCEEEEEEEECC
GSCTATLIWIVSSIGFSYYVSTIASYNATYGPLGAVVATMMWFFVTAYVILLGAELNAGL
CCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
EAEMELRPSEGDAGQRPRPGE
CEEEEECCCCCCCCCCCCCCC
>Mature Secondary Structure
MQANSHFSPAGNGPTPCPFPSRSMLRQMWKPVLGRMARNLSSDQITLAAAGCAFYATLSL
CCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEHHHHHHHHHHH
FPAISTLISIYGLMFDPDTVEPQMDVLRHLLPPSAFTLIDERIHTLVAEPHSSLTLNLIL
HHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCEEEEHHH
STTITLWSASAATRSIISAVNIAYDTRETRGFVQFHLMALGMTLCAICGAVLTLSVLVAL
HHHHHHHCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
PVLIDFVPARLGLAPPPWSVELLVQTGGPALMLLFVLAACSLLYRFSPNRRIVHWICILP
HHHHHHHHHHCCCCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHCCCCCEEEEEEEECC
GSCTATLIWIVSSIGFSYYVSTIASYNATYGPLGAVVATMMWFFVTAYVILLGAELNAGL
CCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
EAEMELRPSEGDAGQRPRPGE
CEEEEECCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8969503; 9384377 [H]