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The map label for this gene is yodF [H]

Identifier: 162147111

GI number: 162147111

Start: 1316469

End: 1317968

Strand: Reverse

Name: yodF [H]

Synonym: GDI_1316

Alternate gene names: 162147111

Gene position: 1317968-1316469 (Counterclockwise)

Preceding gene: 162147112

Following gene: 162147109

Centisome position: 33.42

GC content: 69.87

Gene sequence:

>1500_bases
ATGGCGGCGCATCCCTCCGGCAGCGTGGCCCCCGGCGGCTTGGCCCCCGGCGGCCTGGCCCTGGTCGTCTTCGTCCTGTT
CTTTGCCGCGACCATCCTGCTGGGCAGCAGCGTATCGTGGTGGCGGGGGCGCGGGACCGCGCCGCACGGTGGCGCGGCCG
GGTCCGAGGAATGGGGGCTGGGCGGCCGCCAGTTCGGCACCTGGATCACCTGGTTCCTGGTCGGCGGCGATTTCTATACC
GCCTATACCATCATCGCGGTGCCGGCGCTGGTCTACGCCACCGGGGCGTTCGGTTTCTTCGCGCTGCCCTATACCATCAT
CGTCTATCCGTTCGTGTTCCTGGTCATGCCCGTCCTGTGGCGGATCGCCCATGACGGGCGGCACGCCACGGCGGCGGACA
TCGTGCGGGCGCGCTTCGGCAGCCGGGCGCTGGAACTGGCCATCGCCGGCAGCGGGCTGGTGGCCGTCATGCCCTATATC
GCGCTGCAGCTCATCGGCATCCGCACCGTCATCGCGGCGCTGGGCCTGCCGGGCGAGATCCCGCTGATCGTCGCCTTCGT
CTCTCTGGCCGCCTATACGTGGCTGGGGGGCCTGCACGCGCCCGCGCTGACGGCGTTCATCAAGGACATCATGATCTATG
TCGCGGTGCTGGCCGCCGTCACGGTCATCCCGCTGCACCTGGGCGGCTATGGCGCGATGTTCGCCAGTGCGGCGCGGCAC
CTGCCGCACCCGGCGGACGGCCGCGCGCTGGCGGCGGGGCAGGGCGTGCCGTACGCCACGCTGGCACTGTCATCCGCCCT
GGCGGCGTTCCTGTATCCGCATACGCTGACCGGCGTGCTGGCCGCCCGGTCGGCCGACACCATCCGCAAGAACGCGGTAA
TGCTGCCGGCCTATACGCTGCTGCTGGGGCTGATCGCCATGCTGGGGCTGATGGCCCATGCGGCGGGCATCGTCACCACC
CAGTCGTCATCGGTGGTGCCGCTGCTGTTCCTGACGATCTTTCCCGACTGGTTCAGCGGTTTCTGCTTCGCGGCAGTCGC
GGTCGGGGCGCTGGTCCCCGCCGCCGTCATGGCCATCGGCGCCGCCAACCTGGTCACCAGCAACATCGCGCCCGCGTGGC
GCCACGACGTGCGCGTCGCGCGCGTCACGGCCCTGGGCGTCAAGCTGGGGGCGCTGGCCTGCGTGCTGTTCCTGAACGCG
CAATTCGCCATCGACCTGCAATTGCTGGGCAGCCTGTGGATCCTGCAGACCTTTCCCGCCCTGGTGCTGGGGCTGACGCG
CATTCGCTTTTCCGCCGCGTCCATGCTGGTGGGCTGGGCGGCGGGCACGGCATTCGGCACCATCGTCTGTTTCCATGACG
GGCTGAAACCCACCCATCTGCTGGCGCTGGGCGGGATGCATCTGGCGGTTTCGACCGGATTGCTGGCGCTGCTGGTCAAT
ATCGGCACGGCGGCCATCACGGCAGGGGCGCAGCACCTGCGCCCGGCAAAAGCCCCCTGA

Upstream 100 bases:

>100_bases
CCGTGCTGCTGGGCTTTCCCTTTTTCTACTGGTACCAGCTTGCCTGGGTCCCGGCGACATCGCTGCTGATCTGGCTGGTC
TGGAAGCGGGGCACGCGATG

Downstream 100 bases:

>100_bases
GCAGTTCCTCCACCCGCCGAATCACCCTTTCGACGTCGATCCCCTGCCCCCAGGGGGCCATATGGTCCTGTCGCGCCGCC
CCGGTCGGGAACAGATCCGC

Product: sodium symporter protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 499; Mature: 498

Protein sequence:

>499_residues
MAAHPSGSVAPGGLAPGGLALVVFVLFFAATILLGSSVSWWRGRGTAPHGGAAGSEEWGLGGRQFGTWITWFLVGGDFYT
AYTIIAVPALVYATGAFGFFALPYTIIVYPFVFLVMPVLWRIAHDGRHATAADIVRARFGSRALELAIAGSGLVAVMPYI
ALQLIGIRTVIAALGLPGEIPLIVAFVSLAAYTWLGGLHAPALTAFIKDIMIYVAVLAAVTVIPLHLGGYGAMFASAARH
LPHPADGRALAAGQGVPYATLALSSALAAFLYPHTLTGVLAARSADTIRKNAVMLPAYTLLLGLIAMLGLMAHAAGIVTT
QSSSVVPLLFLTIFPDWFSGFCFAAVAVGALVPAAVMAIGAANLVTSNIAPAWRHDVRVARVTALGVKLGALACVLFLNA
QFAIDLQLLGSLWILQTFPALVLGLTRIRFSAASMLVGWAAGTAFGTIVCFHDGLKPTHLLALGGMHLAVSTGLLALLVN
IGTAAITAGAQHLRPAKAP

Sequences:

>Translated_499_residues
MAAHPSGSVAPGGLAPGGLALVVFVLFFAATILLGSSVSWWRGRGTAPHGGAAGSEEWGLGGRQFGTWITWFLVGGDFYT
AYTIIAVPALVYATGAFGFFALPYTIIVYPFVFLVMPVLWRIAHDGRHATAADIVRARFGSRALELAIAGSGLVAVMPYI
ALQLIGIRTVIAALGLPGEIPLIVAFVSLAAYTWLGGLHAPALTAFIKDIMIYVAVLAAVTVIPLHLGGYGAMFASAARH
LPHPADGRALAAGQGVPYATLALSSALAAFLYPHTLTGVLAARSADTIRKNAVMLPAYTLLLGLIAMLGLMAHAAGIVTT
QSSSVVPLLFLTIFPDWFSGFCFAAVAVGALVPAAVMAIGAANLVTSNIAPAWRHDVRVARVTALGVKLGALACVLFLNA
QFAIDLQLLGSLWILQTFPALVLGLTRIRFSAASMLVGWAAGTAFGTIVCFHDGLKPTHLLALGGMHLAVSTGLLALLVN
IGTAAITAGAQHLRPAKAP
>Mature_498_residues
AAHPSGSVAPGGLAPGGLALVVFVLFFAATILLGSSVSWWRGRGTAPHGGAAGSEEWGLGGRQFGTWITWFLVGGDFYTA
YTIIAVPALVYATGAFGFFALPYTIIVYPFVFLVMPVLWRIAHDGRHATAADIVRARFGSRALELAIAGSGLVAVMPYIA
LQLIGIRTVIAALGLPGEIPLIVAFVSLAAYTWLGGLHAPALTAFIKDIMIYVAVLAAVTVIPLHLGGYGAMFASAARHL
PHPADGRALAAGQGVPYATLALSSALAAFLYPHTLTGVLAARSADTIRKNAVMLPAYTLLLGLIAMLGLMAHAAGIVTTQ
SSSVVPLLFLTIFPDWFSGFCFAAVAVGALVPAAVMAIGAANLVTSNIAPAWRHDVRVARVTALGVKLGALACVLFLNAQ
FAIDLQLLGSLWILQTFPALVLGLTRIRFSAASMLVGWAAGTAFGTIVCFHDGLKPTHLLALGGMHLAVSTGLLALLVNI
GTAAITAGAQHLRPAKAP

Specific function: Unknown

COG id: COG0591

COG function: function code ER; Na+/proline symporter

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sodium:solute symporter (SSF) (TC 2.A.21) family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001734 [H]

Pfam domain/function: PF00474 SSF [H]

EC number: NA

Molecular weight: Translated: 51609; Mature: 51478

Theoretical pI: Translated: 10.01; Mature: 10.01

Prosite motif: PS50283 NA_SOLUT_SYMP_3

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAAHPSGSVAPGGLAPGGLALVVFVLFFAATILLGSSVSWWRGRGTAPHGGAAGSEEWGL
CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHCCCCCCCCCCCCCCCCCCC
GGRQFGTWITWFLVGGDFYTAYTIIAVPALVYATGAFGFFALPYTIIVYPFVFLVMPVLW
CCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RIAHDGRHATAADIVRARFGSRALELAIAGSGLVAVMPYIALQLIGIRTVIAALGLPGEI
HHHCCCCCHHHHHHHHHHHCCHHEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHCCCCCH
PLIVAFVSLAAYTWLGGLHAPALTAFIKDIMIYVAVLAAVTVIPLHLGGYGAMFASAARH
HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
LPHPADGRALAAGQGVPYATLALSSALAAFLYPHTLTGVLAARSADTIRKNAVMLPAYTL
CCCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHCCEEHHHHHH
LLGLIAMLGLMAHAAGIVTTQSSSVVPLLFLTIFPDWFSGFCFAAVAVGALVPAAVMAIG
HHHHHHHHHHHHHHHHEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AANLVTSNIAPAWRHDVRVARVTALGVKLGALACVLFLNAQFAIDLQLLGSLWILQTFPA
HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHEEHHHHHHHHHHHHHHHH
LVLGLTRIRFSAASMLVGWAAGTAFGTIVCFHDGLKPTHLLALGGMHLAVSTGLLALLVN
HHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEECCCCHHHHHHCCCHHHHHHHHHHHHHHH
IGTAAITAGAQHLRPAKAP
HHHHHHHCCHHHCCCCCCC
>Mature Secondary Structure 
AAHPSGSVAPGGLAPGGLALVVFVLFFAATILLGSSVSWWRGRGTAPHGGAAGSEEWGL
CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHCCCCCCCCCCCCCCCCCCC
GGRQFGTWITWFLVGGDFYTAYTIIAVPALVYATGAFGFFALPYTIIVYPFVFLVMPVLW
CCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RIAHDGRHATAADIVRARFGSRALELAIAGSGLVAVMPYIALQLIGIRTVIAALGLPGEI
HHHCCCCCHHHHHHHHHHHCCHHEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHCCCCCH
PLIVAFVSLAAYTWLGGLHAPALTAFIKDIMIYVAVLAAVTVIPLHLGGYGAMFASAARH
HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
LPHPADGRALAAGQGVPYATLALSSALAAFLYPHTLTGVLAARSADTIRKNAVMLPAYTL
CCCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHCCEEHHHHHH
LLGLIAMLGLMAHAAGIVTTQSSSVVPLLFLTIFPDWFSGFCFAAVAVGALVPAAVMAIG
HHHHHHHHHHHHHHHHEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AANLVTSNIAPAWRHDVRVARVTALGVKLGALACVLFLNAQFAIDLQLLGSLWILQTFPA
HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHEEHHHHHHHHHHHHHHHH
LVLGLTRIRFSAASMLVGWAAGTAFGTIVCFHDGLKPTHLLALGGMHLAVSTGLLALLVN
HHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEECCCCHHHHHHCCCHHHHHHHHHHHHHHH
IGTAAITAGAQHLRPAKAP
HHHHHHHCCHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9734814; 9384377 [H]