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The map label for this gene is fixK [H]

Identifier: 162147068

GI number: 162147068

Start: 1270517

End: 1271269

Strand: Reverse

Name: fixK [H]

Synonym: GDI_1273

Alternate gene names: 162147068

Gene position: 1271269-1270517 (Counterclockwise)

Preceding gene: 162147076

Following gene: 162147066

Centisome position: 32.23

GC content: 67.99

Gene sequence:

>753_bases
ATGTCTGACCAGACTACCTGTGAGCGCGAATCCCGGCCACGCCGCCTGATCCTGGCCGGTGCGCACCGCCAGCCGGGTTA
CTGCCTGACCTGCGGCGTCCGTCCCCGCAGCGTCTGCAGTGCCATCAGCGACGACGACATCGTCCGGCTGGCGGAAACGG
CGGTCGAGACCCTGGTACTGCCGGGCCGCGCCTTCGTCGAGGAAGGCGCCCCCGCGACCGATTTCTTCAGCATCACCTCG
GGCAACGTGAAGCTGTTCAAGGCGCTGCCCGACGGACGGCGGCAGATCACCGGCTTCGCGGGTGCCGGGCATTTCCTGGG
GCTGGCGGTGACGGACCAGTACGCCTTCGGGGCCGAGGCGGTGGACACGGTGCGGCTGTGCCGGTTTTCACGCGCGCGGA
TGCGGCACCTGATGGACGATTTCCCCCGGCTGGAACGCAGGCTGCTGGAGGAAGCGTCGAACGAGCTGGTGGCGGCGCAG
AACCAGATGCTGCTGCTGGGCCGCAAGACCGCGCGCGAACGGGTGGCCAGCTTCCTGCTGGACCGCGTGCGCGACATGCT
GAATCCGTCCGGGGACGTCCCCCTGCCCATGACCCGTTCGGACATCGCCGATTACCTGGGCCTGACGATCGAGACCGTCA
GCCGGACATTGAGCTGGATGCGCACCGAACGCCTGATCACCATCGGCAAGGGCCACACCGTGCGCATCACCGCGATGGAG
CGGCTGGAATCCCTGGCCAGCGGCAATAGCTGA

Upstream 100 bases:

>100_bases
CATCCTGTGTTGCAGTCTTCTGCGACGGACCGTGACCCGGTCTGCCGAAACGACCAGTCCGCCATCCCCGGCGGGCCTGA
ACCGGGAGGAACCCGGACGT

Downstream 100 bases:

>100_bases
GAGGCTGCCTCTGAACGGCTGGTCCGGGCGCCTGCGGCTTTCCGCTATTCGGTTTCCTGTTCCCGCCGGGGAATGATCGC
GGACTGTACGGTGCGTGCGC

Product: transcriptional activatory

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 250; Mature: 249

Protein sequence:

>250_residues
MSDQTTCERESRPRRLILAGAHRQPGYCLTCGVRPRSVCSAISDDDIVRLAETAVETLVLPGRAFVEEGAPATDFFSITS
GNVKLFKALPDGRRQITGFAGAGHFLGLAVTDQYAFGAEAVDTVRLCRFSRARMRHLMDDFPRLERRLLEEASNELVAAQ
NQMLLLGRKTARERVASFLLDRVRDMLNPSGDVPLPMTRSDIADYLGLTIETVSRTLSWMRTERLITIGKGHTVRITAME
RLESLASGNS

Sequences:

>Translated_250_residues
MSDQTTCERESRPRRLILAGAHRQPGYCLTCGVRPRSVCSAISDDDIVRLAETAVETLVLPGRAFVEEGAPATDFFSITS
GNVKLFKALPDGRRQITGFAGAGHFLGLAVTDQYAFGAEAVDTVRLCRFSRARMRHLMDDFPRLERRLLEEASNELVAAQ
NQMLLLGRKTARERVASFLLDRVRDMLNPSGDVPLPMTRSDIADYLGLTIETVSRTLSWMRTERLITIGKGHTVRITAME
RLESLASGNS
>Mature_249_residues
SDQTTCERESRPRRLILAGAHRQPGYCLTCGVRPRSVCSAISDDDIVRLAETAVETLVLPGRAFVEEGAPATDFFSITSG
NVKLFKALPDGRRQITGFAGAGHFLGLAVTDQYAFGAEAVDTVRLCRFSRARMRHLMDDFPRLERRLLEEASNELVAAQN
QMLLLGRKTARERVASFLLDRVRDMLNPSGDVPLPMTRSDIADYLGLTIETVSRTLSWMRTERLITIGKGHTVRITAMER
LESLASGNS

Specific function: B.japonicum has two fixLJ-dependent fixK homologs that are activators of the transcription of a group of genes involved in anaerobic processes such as denitrification and possibly nitrogen fixation. FixK may bind DNA at the FNR consensus binding site [H]

COG id: COG0664

COG function: function code T; cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH crp-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1787595, Length=228, Percent_Identity=27.1929824561404, Blast_Score=90, Evalue=1e-19,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR018490
- InterPro:   IPR000595
- InterPro:   IPR001808
- InterPro:   IPR012318
- InterPro:   IPR014710
- InterPro:   IPR018335
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00027 cNMP_binding; PF00325 Crp [H]

EC number: NA

Molecular weight: Translated: 27714; Mature: 27583

Theoretical pI: Translated: 8.50; Mature: 8.50

Prosite motif: PS50042 CNMP_BINDING_3 ; PS00042 HTH_CRP_1 ; PS51063 HTH_CRP_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.0 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
5.2 %Cys+Met (Translated Protein)
2.0 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
4.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSDQTTCERESRPRRLILAGAHRQPGYCLTCGVRPRSVCSAISDDDIVRLAETAVETLVL
CCCCCCCHHCCCCCEEEEEECCCCCCEEEEECCCHHHHHHHCCCCHHHHHHHHHHHHHHC
PGRAFVEEGAPATDFFSITSGNVKLFKALPDGRRQITGFAGAGHFLGLAVTDQYAFGAEA
CCHHHHHCCCCCCCEEEEECCCEEEEECCCCCHHHEEEECCCCHHEEEEEECCHHCCHHH
VDTVRLCRFSRARMRHLMDDFPRLERRLLEEASNELVAAQNQMLLLGRKTARERVASFLL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEHHHHHHHHHHHHH
DRVRDMLNPSGDVPLPMTRSDIADYLGLTIETVSRTLSWMRTERLITIGKGHTVRITAME
HHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHEEEECCCCEEEEHHHH
RLESLASGNS
HHHHHHCCCC
>Mature Secondary Structure 
SDQTTCERESRPRRLILAGAHRQPGYCLTCGVRPRSVCSAISDDDIVRLAETAVETLVL
CCCCCCHHCCCCCEEEEEECCCCCCEEEEECCCHHHHHHHCCCCHHHHHHHHHHHHHHC
PGRAFVEEGAPATDFFSITSGNVKLFKALPDGRRQITGFAGAGHFLGLAVTDQYAFGAEA
CCHHHHHCCCCCCCEEEEECCCEEEEECCCCCHHHEEEECCCCHHEEEEEECCHHCCHHH
VDTVRLCRFSRARMRHLMDDFPRLERRLLEEASNELVAAQNQMLLLGRKTARERVASFLL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEHHHHHHHHHHHHH
DRVRDMLNPSGDVPLPMTRSDIADYLGLTIETVSRTLSWMRTERLITIGKGHTVRITAME
HHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHEEEECCCCEEEEHHHH
RLESLASGNS
HHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: Fe [C]

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1551834; 12597275 [H]