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The map label for this gene is dapB

Identifier: 162147055

GI number: 162147055

Start: 1255550

End: 1256320

Strand: Reverse

Name: dapB

Synonym: GDI_1260

Alternate gene names: 162147055

Gene position: 1256320-1255550 (Counterclockwise)

Preceding gene: 162147056

Following gene: 162147054

Centisome position: 31.85

GC content: 71.34

Gene sequence:

>771_bases
ATGACGACACAGGGCGTACGGATCGGCATCGCCGGCATCAACGGGCGGGTCGGCCGCCTGCTGCGCGAGGAAGTGACGAC
CGGCGGCGGCATCCTGTCCGGTGGCACGGCGCGCGACGCCGCGCCGGCATCCGATGTCTTTGCCACCCTGGACGCACTGG
CCCCGCGCTGCGACGTGGTGATCGATTTCACCCATGCCGCGACGGTGCGGACCCACGCTGATATCCTGGCCCGGGCCGGG
GTGGCGTGGGTGCTGGGCACCACCGGCCTGTCGGCCGCAGACCTGGAGGCCGTCCGTACGGCGGCCGGCCGCATTCCCGT
GGTGCATGCGGCGAACTATTCCCCCGGCGTCACGCTGGTCACGCGCCTGGCCCGGCAGATGGCGGCCGCCCTGCCCTCGG
CCACGTACGATGCCGAAATCCTGGAAATGCATCACCGGCAGAAGGTCGATGCGCCATCCGGCACGGCGCTGGCGATCGGC
CAGGCGGTGGCCGACGGGCGCGGCATCGACCTGGCCAGCCATATCGAGGACGGACGCACCGGCCATACCGGCCCGCGCCG
CGCCGACGCGATCGGCTTCGCCGTGCTGCGCGGCGGCCAGATCGTGGGCGAGCATACGGTGTCCTTCACCTCGGCCACCG
AGCAGATCGCCCTGACCCACCGGTCGTTCGACCGCCGCATCTATGCCACCGGCGCGGTGCGGGCGGCGCTGTGGCTGCGC
GGACAGGCGTCGGGTCTGTATGACATGGAAGATGTACTGGGGCTGGATTGA

Upstream 100 bases:

>100_bases
TAGAAAACGACTATCCATGGTGATCCCCCCACTCGCACCGTGGATATTCCAGGCGGCGCGATCCCCCGGTCGCGCCGCCA
CCCGTTTCAGGGGCCATGAC

Downstream 100 bases:

>100_bases
CGGCGCTTGCCGCGTCCCCGCCGGCTGCCTCGCAATCTCCCCAGCGGGACTGTGGTATCCCGTGAAAATACTTGACGCTC
TGGGGGTATTGGGTCAAACG

Product: dihydrodipicolinate reductase

Products: NA

Alternate protein names: DHPR

Number of amino acids: Translated: 256; Mature: 255

Protein sequence:

>256_residues
MTTQGVRIGIAGINGRVGRLLREEVTTGGGILSGGTARDAAPASDVFATLDALAPRCDVVIDFTHAATVRTHADILARAG
VAWVLGTTGLSAADLEAVRTAAGRIPVVHAANYSPGVTLVTRLARQMAAALPSATYDAEILEMHHRQKVDAPSGTALAIG
QAVADGRGIDLASHIEDGRTGHTGPRRADAIGFAVLRGGQIVGEHTVSFTSATEQIALTHRSFDRRIYATGAVRAALWLR
GQASGLYDMEDVLGLD

Sequences:

>Translated_256_residues
MTTQGVRIGIAGINGRVGRLLREEVTTGGGILSGGTARDAAPASDVFATLDALAPRCDVVIDFTHAATVRTHADILARAG
VAWVLGTTGLSAADLEAVRTAAGRIPVVHAANYSPGVTLVTRLARQMAAALPSATYDAEILEMHHRQKVDAPSGTALAIG
QAVADGRGIDLASHIEDGRTGHTGPRRADAIGFAVLRGGQIVGEHTVSFTSATEQIALTHRSFDRRIYATGAVRAALWLR
GQASGLYDMEDVLGLD
>Mature_255_residues
TTQGVRIGIAGINGRVGRLLREEVTTGGGILSGGTARDAAPASDVFATLDALAPRCDVVIDFTHAATVRTHADILARAGV
AWVLGTTGLSAADLEAVRTAAGRIPVVHAANYSPGVTLVTRLARQMAAALPSATYDAEILEMHHRQKVDAPSGTALAIGQ
AVADGRGIDLASHIEDGRTGHTGPRRADAIGFAVLRGGQIVGEHTVSFTSATEQIALTHRSFDRRIYATGAVRAALWLRG
QASGLYDMEDVLGLD

Specific function: Biosynthesis of diaminopimelate and lysine from aspartate semialdehyde; second step. [C]

COG id: COG0289

COG function: function code E; Dihydrodipicolinate reductase

Gene ontology:

Cell location: Cytoplasm

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the dihydrodipicolinate reductase family

Homologues:

Organism=Escherichia coli, GI1786214, Length=272, Percent_Identity=43.0147058823529, Blast_Score=172, Evalue=2e-44,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): DAPB_GLUDA (A9HE99)

Other databases:

- EMBL:   AM889285
- EMBL:   CP001189
- RefSeq:   YP_001601516.1
- RefSeq:   YP_002276346.1
- ProteinModelPortal:   A9HE99
- SMR:   A9HE99
- GeneID:   5789180
- GeneID:   6975397
- GenomeReviews:   AM889285_GR
- GenomeReviews:   CP001189_GR
- KEGG:   gdj:Gdia_1971
- HOGENOM:   HBG594002
- OMA:   GRMGKTL
- ProtClustDB:   PRK00048
- GO:   GO:0005737
- GO:   GO:0005488
- HAMAP:   MF_00102
- InterPro:   IPR022663
- InterPro:   IPR000846
- InterPro:   IPR022664
- InterPro:   IPR011770
- InterPro:   IPR016040
- Gene3D:   G3DSA:3.40.50.720
- PANTHER:   PTHR20836
- TIGRFAMs:   TIGR00036

Pfam domain/function: PF05173 DapB_C; PF01113 DapB_N

EC number: =1.3.1.26

Molecular weight: Translated: 26605; Mature: 26474

Theoretical pI: Translated: 7.03; Mature: 7.03

Prosite motif: PS01298 DAPB

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
1.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTTQGVRIGIAGINGRVGRLLREEVTTGGGILSGGTARDAAPASDVFATLDALAPRCDVV
CCCCCEEEEEECCCHHHHHHHHHHHCCCCCEECCCCCCCCCCHHHHHHHHHHHCCCCCEE
IDFTHAATVRTHADILARAGVAWVLGTTGLSAADLEAVRTAAGRIPVVHAANYSPGVTLV
EEECCHHHHHHHHHHHHHCCEEEEEECCCCCHHHHHHHHHHCCCCEEEEECCCCCCHHHH
TRLARQMAAALPSATYDAEILEMHHRQKVDAPSGTALAIGQAVADGRGIDLASHIEDGRT
HHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCCCCEEEHHHHHCCCCCCCHHHHHCCCCC
GHTGPRRADAIGFAVLRGGQIVGEHTVSFTSATEQIALTHRSFDRRIYATGAVRAALWLR
CCCCCCHHHHHHHHHHCCCEEEECCEEEEHHHHHHHHHHHHHHCCEEEEHHHHHHHHEEC
GQASGLYDMEDVLGLD
CCCCCCCCHHHHHCCC
>Mature Secondary Structure 
TTQGVRIGIAGINGRVGRLLREEVTTGGGILSGGTARDAAPASDVFATLDALAPRCDVV
CCCCEEEEEECCCHHHHHHHHHHHCCCCCEECCCCCCCCCCHHHHHHHHHHHCCCCCEE
IDFTHAATVRTHADILARAGVAWVLGTTGLSAADLEAVRTAAGRIPVVHAANYSPGVTLV
EEECCHHHHHHHHHHHHHCCEEEEEECCCCCHHHHHHHHHHCCCCEEEEECCCCCCHHHH
TRLARQMAAALPSATYDAEILEMHHRQKVDAPSGTALAIGQAVADGRGIDLASHIEDGRT
HHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCCCCEEEHHHHHCCCCCCCHHHHHCCCCC
GHTGPRRADAIGFAVLRGGQIVGEHTVSFTSATEQIALTHRSFDRRIYATGAVRAALWLR
CCCCCCHHHHHHHHHHCCCEEEECCEEEEHHHHHHHHHHHHHHCCEEEEHHHHHHHHEEC
GQASGLYDMEDVLGLD
CCCCCCCCHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA