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The map label for this gene is yggB [C]

Identifier: 162146943

GI number: 162146943

Start: 1141835

End: 1143019

Strand: Reverse

Name: yggB [C]

Synonym: GDI_1148

Alternate gene names: 162146943

Gene position: 1143019-1141835 (Counterclockwise)

Preceding gene: 162146944

Following gene: 162146940

Centisome position: 28.98

GC content: 66.16

Gene sequence:

>1185_bases
ATGTCCGGCGTCCGCCACTGGTTCGACTGGCTTCCCGCCCCCGTCGCCTCGATCCTGCTGCTGGTCATCGCCGCTTTTAT
CGCGCGTCTGTTCAGCCGTCTCATTACGGATGCCATTCCGCGCCTGCCGGGCCTCAGGCGTTTCCCGATCATTCCGCTGC
TGATGGTCCGGCTGCGGCCGTCCATCCGCATGCTGCTGATGCTGCTCGCCGCCAGTGCCGCCCTTCCCGCCGCTTCGGTC
GGATTGTCGAGCGAGACGCTCTACATGCTCGGCAAGGTGTTCGCGTTCCTGTTCATCCTGATCCTGGGCTTCGGAATCAT
CCGCGCGCTGCGGATCGCCACGGACAGCTACCTGACGCGCATGGGCCAGCGGGACCCGGGTGACGACATCACGGTCCGTT
CCCACCAGACGCAGATCCGGGTCCTGCGCCGGCTGGTCGAAATCACGCTCGGGGTCATTACGGTGGCGTCGGCGCTGATG
GTGTTCGATACCGTGCAGCGTTTCGGCCTGTCGCTCTTCGCTTCGGCCGGCGCGGCCTCGCTGGTCGTCGGCCTGTCCGC
CCGTCCGGCGCTCAGCAACCTGATCGCCGGCGTCCAGATCGCGATCACGCAGCCGATCCGCATGGAGGACATGCTGATCC
TCAACGGCGACTGGGCCTGGGTGGAGGAAATCAACGCCACCTATGTCGTGCTGCGGACGTGGGACAAGCGCCGCTATATC
GTGCCGATCGCCTATTTCCTTGAAAATCCGTTCCAGAACTGGACGCACAGCGCGCCCGCGCTGGTCGGTTCGGTCTTTCT
CTGGCTCGACTACCGCACGCCCATGGACCGTATCCGCCAGTTCCTGGAGGAAGAGATCGTCCATTGCCCCGATTGGGACA
AGGACCGCGCCAATCTGGCCTGCCAGGTGGCCGACAGCAACGCGCAGGTCATTTCCATCCGCATCATCGCGGGCGCGGCG
GGTGCGGGACAGATGTGGAACCTGTGCTGCGACGTGCGCGAGCGCATTCTCAAGCGCATCCGCGAGGAAATCCCCGAATG
CATCCCCCGCGGCCGGACGGCGCTGGTCGGCGACGGGGCGGGCAACGATGCCTGGCCGGAGGCCTTGGCGGCCCCGCACG
TCAATCGTCCCGACCGGGGCCCCTATACCGGCCCGAACCTGCAGGTATCCCCGCCGCGCACATAG

Upstream 100 bases:

>100_bases
GAAATACTCCAGCCACATTTTGACATACTGGCGCGACGCCGGACGCGGCGTCCGCGAGAGGGAGATATTCGCACCGATGA
GACATGATTACGTCGCCTCG

Downstream 100 bases:

>100_bases
GGGGCAGGGCGGGGGCCGGGCGCGCAGGCCCGGCCCCGGATGGCGTCAGGCGGTCTCGACCGGCTTGTGCGGCACGGCGA
CGTCGCGGCCGGTCAGCATC

Product: mechanosensitive ion channel

Products: NA

Alternate protein names: Small-Conductance Mechanosensitive Channel; Mechanosensitive Ion Channel Family Protein; Mechanosensitive Ion Channel Protein MscS; Mechanosensitive Ion Channel MscS; Mscs Mechanosensitive Ion Channel; Mechanosensitive Ion Channel; Small-Conductance Mechanosensitive Ion Channel; Mechanosensitive Ion Channel Domain-Containing Protein; MscS Family Transporter; Mechanosensitive Ion Channel Protein; MscS Mechanosensitive Ion Channel Protein; Transporter MscS Family; Small-Conductance Mechanosensitive Channel-Like Protein; Mechanosensitive Channel Protein

Number of amino acids: Translated: 394; Mature: 393

Protein sequence:

>394_residues
MSGVRHWFDWLPAPVASILLLVIAAFIARLFSRLITDAIPRLPGLRRFPIIPLLMVRLRPSIRMLLMLLAASAALPAASV
GLSSETLYMLGKVFAFLFILILGFGIIRALRIATDSYLTRMGQRDPGDDITVRSHQTQIRVLRRLVEITLGVITVASALM
VFDTVQRFGLSLFASAGAASLVVGLSARPALSNLIAGVQIAITQPIRMEDMLILNGDWAWVEEINATYVVLRTWDKRRYI
VPIAYFLENPFQNWTHSAPALVGSVFLWLDYRTPMDRIRQFLEEEIVHCPDWDKDRANLACQVADSNAQVISIRIIAGAA
GAGQMWNLCCDVRERILKRIREEIPECIPRGRTALVGDGAGNDAWPEALAAPHVNRPDRGPYTGPNLQVSPPRT

Sequences:

>Translated_394_residues
MSGVRHWFDWLPAPVASILLLVIAAFIARLFSRLITDAIPRLPGLRRFPIIPLLMVRLRPSIRMLLMLLAASAALPAASV
GLSSETLYMLGKVFAFLFILILGFGIIRALRIATDSYLTRMGQRDPGDDITVRSHQTQIRVLRRLVEITLGVITVASALM
VFDTVQRFGLSLFASAGAASLVVGLSARPALSNLIAGVQIAITQPIRMEDMLILNGDWAWVEEINATYVVLRTWDKRRYI
VPIAYFLENPFQNWTHSAPALVGSVFLWLDYRTPMDRIRQFLEEEIVHCPDWDKDRANLACQVADSNAQVISIRIIAGAA
GAGQMWNLCCDVRERILKRIREEIPECIPRGRTALVGDGAGNDAWPEALAAPHVNRPDRGPYTGPNLQVSPPRT
>Mature_393_residues
SGVRHWFDWLPAPVASILLLVIAAFIARLFSRLITDAIPRLPGLRRFPIIPLLMVRLRPSIRMLLMLLAASAALPAASVG
LSSETLYMLGKVFAFLFILILGFGIIRALRIATDSYLTRMGQRDPGDDITVRSHQTQIRVLRRLVEITLGVITVASALMV
FDTVQRFGLSLFASAGAASLVVGLSARPALSNLIAGVQIAITQPIRMEDMLILNGDWAWVEEINATYVVLRTWDKRRYIV
PIAYFLENPFQNWTHSAPALVGSVFLWLDYRTPMDRIRQFLEEEIVHCPDWDKDRANLACQVADSNAQVISIRIIAGAAG
AGQMWNLCCDVRERILKRIREEIPECIPRGRTALVGDGAGNDAWPEALAAPHVNRPDRGPYTGPNLQVSPPRT

Specific function: Unknown

COG id: COG0668

COG function: function code M; Small-conductance mechanosensitive channel

Gene ontology:

Cell location: Integral Membrane Protein [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 43808; Mature: 43677

Theoretical pI: Translated: 9.49; Mature: 9.49

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSGVRHWFDWLPAPVASILLLVIAAFIARLFSRLITDAIPRLPGLRRFPIIPLLMVRLRP
CCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHCH
SIRMLLMLLAASAALPAASVGLSSETLYMLGKVFAFLFILILGFGIIRALRIATDSYLTR
HHHHHHHHHHHHHCCCHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
MGQRDPGDDITVRSHQTQIRVLRRLVEITLGVITVASALMVFDTVQRFGLSLFASAGAAS
HCCCCCCCCEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH
LVVGLSARPALSNLIAGVQIAITQPIRMEDMLILNGDWAWVEEINATYVVLRTWDKRRYI
HHCCCCCCHHHHHHHCCEEEEEECCCCCCCEEEECCCCHHHHHCCCEEEEEEECCCCCEE
VPIAYFLENPFQNWTHSAPALVGSVFLWLDYRTPMDRIRQFLEEEIVHCPDWDKDRANLA
EEHHHHHCCHHHHHCCCHHHHHHHHHHEEECCCCHHHHHHHHHHHHCCCCCCCCCCCCEE
CQVADSNAQVISIRIIAGAAGAGQMWNLCCDVRERILKRIREEIPECIPRGRTALVGDGA
EEEECCCCEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCC
GNDAWPEALAAPHVNRPDRGPYTGPNLQVSPPRT
CCCCCHHHHCCCCCCCCCCCCCCCCCEECCCCCC
>Mature Secondary Structure 
SGVRHWFDWLPAPVASILLLVIAAFIARLFSRLITDAIPRLPGLRRFPIIPLLMVRLRP
CCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHCH
SIRMLLMLLAASAALPAASVGLSSETLYMLGKVFAFLFILILGFGIIRALRIATDSYLTR
HHHHHHHHHHHHHCCCHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
MGQRDPGDDITVRSHQTQIRVLRRLVEITLGVITVASALMVFDTVQRFGLSLFASAGAAS
HCCCCCCCCEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH
LVVGLSARPALSNLIAGVQIAITQPIRMEDMLILNGDWAWVEEINATYVVLRTWDKRRYI
HHCCCCCCHHHHHHHCCEEEEEECCCCCCCEEEECCCCHHHHHCCCEEEEEEECCCCCEE
VPIAYFLENPFQNWTHSAPALVGSVFLWLDYRTPMDRIRQFLEEEIVHCPDWDKDRANLA
EEHHHHHCCHHHHHCCCHHHHHHHHHHEEECCCCHHHHHHHHHHHHCCCCCCCCCCCCEE
CQVADSNAQVISIRIIAGAAGAGQMWNLCCDVRERILKRIREEIPECIPRGRTALVGDGA
EEEECCCCEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCC
GNDAWPEALAAPHVNRPDRGPYTGPNLQVSPPRT
CCCCCHHHHCCCCCCCCCCCCCCCCCEECCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: NA