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The map label for this gene is insF1 [C]

Identifier: 162146898

GI number: 162146898

Start: 1091452

End: 1092354

Strand: Reverse

Name: insF1 [C]

Synonym: GDI_1096

Alternate gene names: 162146898

Gene position: 1092354-1091452 (Counterclockwise)

Preceding gene: 162146902

Following gene: 162146892

Centisome position: 27.7

GC content: 62.79

Gene sequence:

>903_bases
ATGGCGTTCATCGACGCCCATCGCGAGGACTTGGGTATCGAGCCGATCTGCCGCGAACTGGCGATTGCCCCATCCTCCTA
TCACGAACATGCTGTCCGTCTGGCGGACCCCGCCAGGCGGCCTGCGCGTGCCCGGCGCGACGACGAACTGAAGGACGAGA
TCAAGCGGGTATATGACGCCAGTTCAAAGCTCTACGGGACGCGCAAAGTCTGGCATCAGATGCGCCGTGAAGGCATTGAG
GTGGCCAAATGCACCGTGGAACGCCTGATGCGTGCCATGGGCCTAGCCGGCATTCGGCGAGGGAAGAGGACGGTCACGAC
CATCAGCAATCCCAAGGCTCCGTGCCCGCTGGACAAGGTGAACCGCGCATTCCGCGTGAGCCGGCCGAATGCCCTGTGGG
TGGTCGATTTCACCTACGTCCACACATGGGCCGGCTTCGTCTATGTCGCCTTCGTGATCGACGCCTATGCCCGGCGCATC
GTCGGCTGGAAGGTCAGCACGTCAGCCACCGCCGGCTTCGTGCTGGACGCCCTGGAGCAGGCGATCCATGCCCGCAGGCC
CGGACCCGAGGATGGCTTGATCCACCATAGTGACAGGGGCGTCCAATACCTCGCCATGAATTACACCCAGCGCCTGGCCG
AGGCCGATCTGGTACCCTCGGTCGGCAGCGTCGGGGACTCCTATGACAATGCCCTGGCCGAGACCATCAACGGCCTCTAC
AAGGCCGAGGTCATCTGGCGGCAGCCTTCCTGGCCGACCGTATCGGCCGTGGAAATGGCAACATTGCGCTGGGTCGATTG
GTTCAATAACCATCGCCTCTTTGGCCCCATCGGCTATATCCCACCCGCCGAGGCCGAAGCCAACTACTATGCAGCCCTCG
AGATCATCGATATGGCTGCGTGA

Upstream 100 bases:

>100_bases
TTGAGCGCGAGGTCAAGGAGTTGCGCCGCGCCAACGAGATCCTGCGCAAGGCATCGGCGTATTTTGCGATGGCGGAGCTC
GACCGCCGCGGGAAATGATG

Downstream 100 bases:

>100_bases
CTCAAACCAAATGGCCTCCGGGAAACCCGGGACGCTTCATTCCGCCGCATGGGCCTCGGCGAGGCTGCCGGGCAATTCGA
CATGCCTCAAGATAGTCCAA

Product: integrase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 300; Mature: 299

Protein sequence:

>300_residues
MAFIDAHREDLGIEPICRELAIAPSSYHEHAVRLADPARRPARARRDDELKDEIKRVYDASSKLYGTRKVWHQMRREGIE
VAKCTVERLMRAMGLAGIRRGKRTVTTISNPKAPCPLDKVNRAFRVSRPNALWVVDFTYVHTWAGFVYVAFVIDAYARRI
VGWKVSTSATAGFVLDALEQAIHARRPGPEDGLIHHSDRGVQYLAMNYTQRLAEADLVPSVGSVGDSYDNALAETINGLY
KAEVIWRQPSWPTVSAVEMATLRWVDWFNNHRLFGPIGYIPPAEAEANYYAALEIIDMAA

Sequences:

>Translated_300_residues
MAFIDAHREDLGIEPICRELAIAPSSYHEHAVRLADPARRPARARRDDELKDEIKRVYDASSKLYGTRKVWHQMRREGIE
VAKCTVERLMRAMGLAGIRRGKRTVTTISNPKAPCPLDKVNRAFRVSRPNALWVVDFTYVHTWAGFVYVAFVIDAYARRI
VGWKVSTSATAGFVLDALEQAIHARRPGPEDGLIHHSDRGVQYLAMNYTQRLAEADLVPSVGSVGDSYDNALAETINGLY
KAEVIWRQPSWPTVSAVEMATLRWVDWFNNHRLFGPIGYIPPAEAEANYYAALEIIDMAA
>Mature_299_residues
AFIDAHREDLGIEPICRELAIAPSSYHEHAVRLADPARRPARARRDDELKDEIKRVYDASSKLYGTRKVWHQMRREGIEV
AKCTVERLMRAMGLAGIRRGKRTVTTISNPKAPCPLDKVNRAFRVSRPNALWVVDFTYVHTWAGFVYVAFVIDAYARRIV
GWKVSTSATAGFVLDALEQAIHARRPGPEDGLIHHSDRGVQYLAMNYTQRLAEADLVPSVGSVGDSYDNALAETINGLYK
AEVIWRQPSWPTVSAVEMATLRWVDWFNNHRLFGPIGYIPPAEAEANYYAALEIIDMAA

Specific function: Involved in the transposition of the insertion sequence [H]

COG id: COG2801

COG function: function code L; Transposase and inactivated derivatives

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 integrase catalytic domain [H]

Homologues:

Organism=Homo sapiens, GI310129419, Length=243, Percent_Identity=51.8518518518518, Blast_Score=248, Evalue=3e-66,
Organism=Escherichia coli, GI1788405, Length=243, Percent_Identity=29.6296296296296, Blast_Score=108, Evalue=6e-25,
Organism=Escherichia coli, GI1787263, Length=243, Percent_Identity=29.6296296296296, Blast_Score=108, Evalue=6e-25,
Organism=Escherichia coli, GI1786753, Length=243, Percent_Identity=29.6296296296296, Blast_Score=108, Evalue=6e-25,
Organism=Escherichia coli, GI1786570, Length=243, Percent_Identity=29.6296296296296, Blast_Score=108, Evalue=6e-25,
Organism=Escherichia coli, GI1786490, Length=243, Percent_Identity=29.6296296296296, Blast_Score=108, Evalue=6e-25,
Organism=Escherichia coli, GI1789981, Length=290, Percent_Identity=24.1379310344828, Blast_Score=103, Evalue=1e-23,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001584
- InterPro:   IPR012337 [H]

Pfam domain/function: PF00665 rve [H]

EC number: NA

Molecular weight: Translated: 33822; Mature: 33691

Theoretical pI: Translated: 8.72; Mature: 8.72

Prosite motif: PS50994 INTEGRASE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAFIDAHREDLGIEPICRELAIAPSSYHEHAVRLADPARRPARARRDDELKDEIKRVYDA
CCCCCCCHHHCCHHHHHHHHHCCCCHHHHHHHHHCCCCCCCHHCCCCHHHHHHHHHHHHH
SSKLYGTRKVWHQMRREGIEVAKCTVERLMRAMGLAGIRRGKRTVTTISNPKAPCPLDKV
HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHH
NRAFRVSRPNALWVVDFTYVHTWAGFVYVAFVIDAYARRIVGWKVSTSATAGFVLDALEQ
HHHEEECCCCEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHCCEECCCCHHHHHHHHHHH
AIHARRPGPEDGLIHHSDRGVQYLAMNYTQRLAEADLVPSVGSVGDSYDNALAETINGLY
HHHHCCCCCCCCCEEECCCCCEEHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHH
KAEVIWRQPSWPTVSAVEMATLRWVDWFNNHRLFGPIGYIPPAEAEANYYAALEIIDMAA
HEEEEEECCCCCCHHHHHHHHHHHHHHHCCCEEECCCCCCCCCCCCCCCEEHEEEHHHCC
>Mature Secondary Structure 
AFIDAHREDLGIEPICRELAIAPSSYHEHAVRLADPARRPARARRDDELKDEIKRVYDA
CCCCCCHHHCCHHHHHHHHHCCCCHHHHHHHHHCCCCCCCHHCCCCHHHHHHHHHHHHH
SSKLYGTRKVWHQMRREGIEVAKCTVERLMRAMGLAGIRRGKRTVTTISNPKAPCPLDKV
HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHH
NRAFRVSRPNALWVVDFTYVHTWAGFVYVAFVIDAYARRIVGWKVSTSATAGFVLDALEQ
HHHEEECCCCEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHCCEECCCCHHHHHHHHHHH
AIHARRPGPEDGLIHHSDRGVQYLAMNYTQRLAEADLVPSVGSVGDSYDNALAETINGLY
HHHHCCCCCCCCCEEECCCCCEEHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHH
KAEVIWRQPSWPTVSAVEMATLRWVDWFNNHRLFGPIGYIPPAEAEANYYAALEIIDMAA
HEEEEEECCCCCCHHHHHHHHHHHHHHHCCCEEECCCCCCCCCCCCCCCEEHEEEHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 2159625; 2824781 [H]