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The map label for this gene is insF1 [C]

Identifier: 162146878

GI number: 162146878

Start: 1070697

End: 1071332

Strand: Direct

Name: insF1 [C]

Synonym: GDI_1066

Alternate gene names: 162146878

Gene position: 1070697-1071332 (Clockwise)

Preceding gene: 162146877

Following gene: 162146881

Centisome position: 27.15

GC content: 63.21

Gene sequence:

>636_bases
ATGCGTGCCATGGGCCTAGCCGGCATTCGGCGAGGGAAGAGGACGGTCACGACCATCAGCAATCCCAAGGCTCCGTGCCC
GCTGGACAAGGTGAACCGCGCATTCCGCGTGAGCCGGCCGAATGCCCTGTGGGTGGTCGATTTCACCTACGTCCACACAT
GGGCCGGCTTCGTCTATGTCGCCTTCGTGATCGACGCCTATGCCCGGCGCATCGTCGGCTGGAAGGTCAGCACGTCAGCC
ACCGCCGGCTTCGTGCTGGACGCCCTGGAGCAGGCGATCCATGCCCGCAGGCCCGGACCCGAGGATGGCTTGATCCACCA
TAGTGACAGGGGCGTCCAATACCTCGCCATGAATTACACCCAGCGCCTGGCCGAGGCCGATCTGGTACCCTCGGTCGGCA
GCGTCGGGGACTCCTATGACAATGCCCTGGCCGAGGCCATCAACGGCCTCTACAAGGCCGAGGTCATCTGGCGGCAGCCT
TCCTGGCCGACCGTATCGGCCGTGGAAATGGCAACATTGCGCTGGGTCGATTGGTTCAATAACCATCGCCTCTTTGGCCC
CATCGGCTATATCCCACCCGCCGAGGCCGAAGCCAACTACTATGCAGCCCTCGAGATCATCGATATGGCTGCGTGA

Upstream 100 bases:

>100_bases
GGGTATATGACGCCAGTTCAAAGCTCTACGGACGCGCAAAGTCTGGCATCAGATGCGCCGTGAAGGCATTGAGGTGGCCA
AATGCACCGTGGAACGCCTG

Downstream 100 bases:

>100_bases
CTCAAACCAAATGGCCTCCGGGAAACCCGGGACGCTTCAATGTGCGCCCGACTGGCTCAGTAGAGACAAGCCCAGAGCAG
CGCACGACAGAGATATTTTC

Product: integrase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 211; Mature: 211

Protein sequence:

>211_residues
MRAMGLAGIRRGKRTVTTISNPKAPCPLDKVNRAFRVSRPNALWVVDFTYVHTWAGFVYVAFVIDAYARRIVGWKVSTSA
TAGFVLDALEQAIHARRPGPEDGLIHHSDRGVQYLAMNYTQRLAEADLVPSVGSVGDSYDNALAEAINGLYKAEVIWRQP
SWPTVSAVEMATLRWVDWFNNHRLFGPIGYIPPAEAEANYYAALEIIDMAA

Sequences:

>Translated_211_residues
MRAMGLAGIRRGKRTVTTISNPKAPCPLDKVNRAFRVSRPNALWVVDFTYVHTWAGFVYVAFVIDAYARRIVGWKVSTSA
TAGFVLDALEQAIHARRPGPEDGLIHHSDRGVQYLAMNYTQRLAEADLVPSVGSVGDSYDNALAEAINGLYKAEVIWRQP
SWPTVSAVEMATLRWVDWFNNHRLFGPIGYIPPAEAEANYYAALEIIDMAA
>Mature_211_residues
MRAMGLAGIRRGKRTVTTISNPKAPCPLDKVNRAFRVSRPNALWVVDFTYVHTWAGFVYVAFVIDAYARRIVGWKVSTSA
TAGFVLDALEQAIHARRPGPEDGLIHHSDRGVQYLAMNYTQRLAEADLVPSVGSVGDSYDNALAEAINGLYKAEVIWRQP
SWPTVSAVEMATLRWVDWFNNHRLFGPIGYIPPAEAEANYYAALEIIDMAA

Specific function: Involved in the transposition of the insertion sequence [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 integrase catalytic domain [H]

Homologues:

Organism=Homo sapiens, GI310129419, Length=156, Percent_Identity=56.4102564102564, Blast_Score=174, Evalue=7e-44,
Organism=Escherichia coli, GI1788405, Length=132, Percent_Identity=37.1212121212121, Blast_Score=87, Evalue=7e-19,
Organism=Escherichia coli, GI1787263, Length=132, Percent_Identity=37.1212121212121, Blast_Score=87, Evalue=7e-19,
Organism=Escherichia coli, GI1786753, Length=132, Percent_Identity=37.1212121212121, Blast_Score=87, Evalue=7e-19,
Organism=Escherichia coli, GI1786570, Length=132, Percent_Identity=37.1212121212121, Blast_Score=87, Evalue=7e-19,
Organism=Escherichia coli, GI1786490, Length=132, Percent_Identity=37.1212121212121, Blast_Score=87, Evalue=7e-19,
Organism=Escherichia coli, GI1789981, Length=171, Percent_Identity=25.7309941520468, Blast_Score=79, Evalue=2e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001584
- InterPro:   IPR012337 [H]

Pfam domain/function: PF00665 rve [H]

EC number: NA

Molecular weight: Translated: 23439; Mature: 23439

Theoretical pI: Translated: 8.41; Mature: 8.41

Prosite motif: PS50994 INTEGRASE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRAMGLAGIRRGKRTVTTISNPKAPCPLDKVNRAFRVSRPNALWVVDFTYVHTWAGFVYV
CCCCCCHHHHCCCEEEEEECCCCCCCCHHHHCHHEEECCCCEEEEEEHHHHHHHHHHHHH
AFVIDAYARRIVGWKVSTSATAGFVLDALEQAIHARRPGPEDGLIHHSDRGVQYLAMNYT
HHHHHHHHHHHHCEEECCCCHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCEEEEHHHHH
QRLAEADLVPSVGSVGDSYDNALAEAINGLYKAEVIWRQPSWPTVSAVEMATLRWVDWFN
HHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHEEEEEEECCCCCCHHHHHHHHHHHHHHHC
NHRLFGPIGYIPPAEAEANYYAALEIIDMAA
CCEEECCCCCCCCCCCCCCEEEEEEEEECCC
>Mature Secondary Structure
MRAMGLAGIRRGKRTVTTISNPKAPCPLDKVNRAFRVSRPNALWVVDFTYVHTWAGFVYV
CCCCCCHHHHCCCEEEEEECCCCCCCCHHHHCHHEEECCCCEEEEEEHHHHHHHHHHHHH
AFVIDAYARRIVGWKVSTSATAGFVLDALEQAIHARRPGPEDGLIHHSDRGVQYLAMNYT
HHHHHHHHHHHHCEEECCCCHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCEEEEHHHHH
QRLAEADLVPSVGSVGDSYDNALAEAINGLYKAEVIWRQPSWPTVSAVEMATLRWVDWFN
HHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHEEEEEEECCCCCCHHHHHHHHHHHHHHHC
NHRLFGPIGYIPPAEAEANYYAALEIIDMAA
CCEEECCCCCCCCCCCCCCEEEEEEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 2159625; 2824781 [H]