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The map label for this gene is rlmH [H]

Identifier: 162146763

GI number: 162146763

Start: 955863

End: 956249

Strand: Direct

Name: rlmH [H]

Synonym: GDI_0943

Alternate gene names: 162146763

Gene position: 955863-956249 (Clockwise)

Preceding gene: 162146762

Following gene: 162146767

Centisome position: 24.23

GC content: 70.8

Gene sequence:

>387_bases
ATGCGGCTGATCGCCGTCGGCCGCATGAAGGACCGGGTGGAGCGCGATCTGTTCCAGCGCTACGCCGAACGGCTGAGCCC
GCGCCTGGATCTGGTCGAGGTGGCCGAGGGCAGGGGCGCACCCGCCGAGATCAAGCGGCGGGAAGGGCAGGCCCTGCTGT
CGGCCCTGCCCGACCGGGCCTTCGCCGTGGCGTTGGACGAGGGCGGCCGTGCCCACGATAGCCTGGCCTTCGCGCGGGTC
CTGGAACGCTGGCTGGGCCTGTCCCGCCCGGTCTGCTTCCTGGTCGGCGGTGCCGAGGGATTGGATGGCCCCGTCCTGGC
TATGCGCGCCGAGCTCTCCCATATGGTCGACTGGGCCCGCACTAGTGATCCTGTACGCACAGGATGA

Upstream 100 bases:

>100_bases
TGTATGGGTTGGAGCGGATGTGGGGCGCCGATCTGGATGTTCCGCCGGCCGAGGCTGAAGTCTGAGGATTGCTTTTTTTT
CCTGAAAAAGAGCGAAGACG

Downstream 100 bases:

>100_bases
TCCGGGGATTATTGGCTGAACAGCTCTACCGGGCGCGTGCGATCGCCTCGGGGCATCCCTATCATCGCGCGGGACGGCCG
GCCTAAAGGCGTCACCCGTG

Product: hypothetical protein

Products: NA

Alternate protein names: 23S rRNA m3Psi1915 methyltransferase; rRNA (pseudouridine-N3-)-methyltransferase rlmH [H]

Number of amino acids: Translated: 128; Mature: 128

Protein sequence:

>128_residues
MRLIAVGRMKDRVERDLFQRYAERLSPRLDLVEVAEGRGAPAEIKRREGQALLSALPDRAFAVALDEGGRAHDSLAFARV
LERWLGLSRPVCFLVGGAEGLDGPVLAMRAELSHMVDWARTSDPVRTG

Sequences:

>Translated_128_residues
MRLIAVGRMKDRVERDLFQRYAERLSPRLDLVEVAEGRGAPAEIKRREGQALLSALPDRAFAVALDEGGRAHDSLAFARV
LERWLGLSRPVCFLVGGAEGLDGPVLAMRAELSHMVDWARTSDPVRTG
>Mature_128_residues
MRLIAVGRMKDRVERDLFQRYAERLSPRLDLVEVAEGRGAPAEIKRREGQALLSALPDRAFAVALDEGGRAHDSLAFARV
LERWLGLSRPVCFLVGGAEGLDGPVLAMRAELSHMVDWARTSDPVRTG

Specific function: Specifically methylates the pseudouridine at position 1915 (m3Psi1915) in 23S rRNA [H]

COG id: COG1576

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasm (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RNA methyltransferase rlmH family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003742 [H]

Pfam domain/function: PF02590 SPOUT_MTase [H]

EC number: NA

Molecular weight: Translated: 14136; Mature: 14136

Theoretical pI: Translated: 8.53; Mature: 8.53

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRLIAVGRMKDRVERDLFQRYAERLSPRLDLVEVAEGRGAPAEIKRREGQALLSALPDRA
CCEEECCHHHHHHHHHHHHHHHHHCCCCCCHHHHHCCCCCCHHHHHHHHHHHHHHCCCCC
FAVALDEGGRAHDSLAFARVLERWLGLSRPVCFLVGGAEGLDGPVLAMRAELSHMVDWAR
EEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHH
TSDPVRTG
CCCCCCCC
>Mature Secondary Structure
MRLIAVGRMKDRVERDLFQRYAERLSPRLDLVEVAEGRGAPAEIKRREGQALLSALPDRA
CCEEECCHHHHHHHHHHHHHHHHHCCCCCCHHHHHCCCCCCHHHHHHHHHHHHHHCCCCC
FAVALDEGGRAHDSLAFARVLERWLGLSRPVCFLVGGAEGLDGPVLAMRAELSHMVDWAR
EEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHH
TSDPVRTG
CCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA