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The map label for this gene is yfdE [H]

Identifier: 162146504

GI number: 162146504

Start: 689651

End: 690913

Strand: Reverse

Name: yfdE [H]

Synonym: GDI_0680

Alternate gene names: 162146504

Gene position: 690913-689651 (Counterclockwise)

Preceding gene: 162146508

Following gene: 162146503

Centisome position: 17.52

GC content: 67.06

Gene sequence:

>1263_bases
ATGCTCCAGGCTGACGCCCCGTCCCCCCATGATGACGACACCGCGCAGGCCGCGCCCGGCGCGGGCCGTCCGCTGCCGCT
GGCGGGCATCCGTGTCCTGGACGTGACCCAGGTCATGGCCGGACCGGTCTGCACCATGCTGCTGGGCGACCTGGGGGCCG
ACGTCGTCAAGATCGAACCGCCGGGGACGGGCGACCAGACGCGCAGCGCCATGGGGTTTCGCATGAAGGGCGACGACAGC
ATGGGATTCCTGAACATGAACAGGAACAAGCGCAGCGTGGCCCTGAACCTGAAGAACGAGTCCGGCCGCGCCGTTTTCCT
GGAAATGGTGAAAACCGCCGATATCGTCGTCGAGAATTACCGGCCGGGCGTGATGCGCAAGCTGGGGATCGATTACGAAA
CCCTGTCGCGGATCAATCCGCGCCTGGTCTATGCCAGCATCTCGGGCTTCGGCCAGACCGGCCCCTGGGCCCAGCGCCCG
GGTTTCGACCTGATGGCGCAGGCGATGTCGGGGGTGATGAGCGTGACCGGCCATCCCGGCGGGCCGCCGGTGAAGGCCGG
CGTGCCGGTGGCCGATATCGGCTGCGCGCTGTTCGCGACCTATGCGATCCTGGCCGCCTATATCGGGTGCGAGAAGACGG
GGCGCGGCCAGTTCATCGATGCGTCGCTGTTCGATTCGGCGCTGGCCTTCTCGATATGGGATATCTCGGAATACTGGGGC
AAGGGCACGATCCCCGAACCGCTGGGCACCGCCAACCGCATGAGCGCGCCGTACCAGGCTGTCCGCGCCGCCGACGGATA
TTTCGTGATGGGGGCGACGAACCAGAAATTATGGGTCCAGCTCTGCACCGAACTGGACCGGAAGGACCTTCTGGACGATC
CGCGCTTCGCCACGATTTCCGACCGGCTGGCCCATCGCGTGGCGCTGATCGAGGAACTGGAGAAGAGTTTCGCGACCCGC
ACCGCCGAAGACTGGGTCGCGACCCTGCTGGCCAGGGGCATTCCGGCCGGCCGCATGAATACCTATCCCGAAGCGTTCGA
GAGCGAGCATGGCATGTTCCGCGAGATGCGCATCGACATTCCCCATCCGGTCGAAGGCACGATCCCCAATATCGGCTTTC
CCGTGAAGCTGCGCGGCACGCCGCAGGCCGTGCGCCGCCCCCCGCCGCTGCTGGGCCAGCACACGCACGAGGTCCTGGCC
GAACGCGGCCTGTCGGATGACGCCATCGCGACCCTGGCGGCCGAGGGGGCCTTCGCGCCGTGA

Upstream 100 bases:

>100_bases
CTTGTGATGCCCCGTCGAATGGTATTATGAATGCAAAATACCAACACCCGTCCACTCACGAAGACGGGAAGGAACAGGGA
GATTCCCCACGATGGACAGT

Downstream 100 bases:

>100_bases
CCGGCGCGAGAGACGGGCACGCCGGTCACGGCGCGACAGACGAGCGCGCCGCCGCCGGCCGGGTTCGGCTGGCGATCGAC
CAGGACGTGGCCCACATCAC

Product: acyl-CoA transferase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 420; Mature: 420

Protein sequence:

>420_residues
MLQADAPSPHDDDTAQAAPGAGRPLPLAGIRVLDVTQVMAGPVCTMLLGDLGADVVKIEPPGTGDQTRSAMGFRMKGDDS
MGFLNMNRNKRSVALNLKNESGRAVFLEMVKTADIVVENYRPGVMRKLGIDYETLSRINPRLVYASISGFGQTGPWAQRP
GFDLMAQAMSGVMSVTGHPGGPPVKAGVPVADIGCALFATYAILAAYIGCEKTGRGQFIDASLFDSALAFSIWDISEYWG
KGTIPEPLGTANRMSAPYQAVRAADGYFVMGATNQKLWVQLCTELDRKDLLDDPRFATISDRLAHRVALIEELEKSFATR
TAEDWVATLLARGIPAGRMNTYPEAFESEHGMFREMRIDIPHPVEGTIPNIGFPVKLRGTPQAVRRPPPLLGQHTHEVLA
ERGLSDDAIATLAAEGAFAP

Sequences:

>Translated_420_residues
MLQADAPSPHDDDTAQAAPGAGRPLPLAGIRVLDVTQVMAGPVCTMLLGDLGADVVKIEPPGTGDQTRSAMGFRMKGDDS
MGFLNMNRNKRSVALNLKNESGRAVFLEMVKTADIVVENYRPGVMRKLGIDYETLSRINPRLVYASISGFGQTGPWAQRP
GFDLMAQAMSGVMSVTGHPGGPPVKAGVPVADIGCALFATYAILAAYIGCEKTGRGQFIDASLFDSALAFSIWDISEYWG
KGTIPEPLGTANRMSAPYQAVRAADGYFVMGATNQKLWVQLCTELDRKDLLDDPRFATISDRLAHRVALIEELEKSFATR
TAEDWVATLLARGIPAGRMNTYPEAFESEHGMFREMRIDIPHPVEGTIPNIGFPVKLRGTPQAVRRPPPLLGQHTHEVLA
ERGLSDDAIATLAAEGAFAP
>Mature_420_residues
MLQADAPSPHDDDTAQAAPGAGRPLPLAGIRVLDVTQVMAGPVCTMLLGDLGADVVKIEPPGTGDQTRSAMGFRMKGDDS
MGFLNMNRNKRSVALNLKNESGRAVFLEMVKTADIVVENYRPGVMRKLGIDYETLSRINPRLVYASISGFGQTGPWAQRP
GFDLMAQAMSGVMSVTGHPGGPPVKAGVPVADIGCALFATYAILAAYIGCEKTGRGQFIDASLFDSALAFSIWDISEYWG
KGTIPEPLGTANRMSAPYQAVRAADGYFVMGATNQKLWVQLCTELDRKDLLDDPRFATISDRLAHRVALIEELEKSFATR
TAEDWVATLLARGIPAGRMNTYPEAFESEHGMFREMRIDIPHPVEGTIPNIGFPVKLRGTPQAVRRPPPLLGQHTHEVLA
ERGLSDDAIATLAAEGAFAP

Specific function: Unknown

COG id: COG1804

COG function: function code C; Predicted acyl-CoA transferases/carnitine dehydratase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CaiB/BaiF CoA-transferase family [H]

Homologues:

Organism=Homo sapiens, GI300863128, Length=392, Percent_Identity=38.7755102040816, Blast_Score=284, Evalue=1e-76,
Organism=Homo sapiens, GI300863124, Length=418, Percent_Identity=37.0813397129187, Blast_Score=275, Evalue=8e-74,
Organism=Homo sapiens, GI300863126, Length=392, Percent_Identity=34.4387755102041, Blast_Score=232, Evalue=5e-61,
Organism=Homo sapiens, GI13376042, Length=418, Percent_Identity=33.9712918660287, Blast_Score=228, Evalue=1e-59,
Organism=Homo sapiens, GI42794625, Length=405, Percent_Identity=29.8765432098765, Blast_Score=145, Evalue=1e-34,
Organism=Homo sapiens, GI266456254, Length=405, Percent_Identity=29.8765432098765, Blast_Score=144, Evalue=1e-34,
Organism=Homo sapiens, GI266458393, Length=275, Percent_Identity=34.1818181818182, Blast_Score=127, Evalue=1e-29,
Organism=Homo sapiens, GI266458397, Length=250, Percent_Identity=34, Blast_Score=127, Evalue=1e-29,
Organism=Homo sapiens, GI42822893, Length=147, Percent_Identity=38.7755102040816, Blast_Score=103, Evalue=4e-22,
Organism=Homo sapiens, GI266458395, Length=147, Percent_Identity=38.7755102040816, Blast_Score=102, Evalue=5e-22,
Organism=Escherichia coli, GI87082093, Length=377, Percent_Identity=37.1352785145889, Blast_Score=258, Evalue=5e-70,
Organism=Escherichia coli, GI1788717, Length=416, Percent_Identity=31.25, Blast_Score=194, Evalue=1e-50,
Organism=Escherichia coli, GI1786222, Length=409, Percent_Identity=28.8508557457213, Blast_Score=110, Evalue=2e-25,
Organism=Caenorhabditis elegans, GI32564160, Length=305, Percent_Identity=27.5409836065574, Blast_Score=103, Evalue=1e-22,
Organism=Caenorhabditis elegans, GI115535051, Length=312, Percent_Identity=25.6410256410256, Blast_Score=90, Evalue=3e-18,
Organism=Drosophila melanogaster, GI24648431, Length=396, Percent_Identity=38.1313131313131, Blast_Score=286, Evalue=1e-77,
Organism=Drosophila melanogaster, GI24585488, Length=307, Percent_Identity=29.9674267100977, Blast_Score=121, Evalue=1e-27,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003673 [H]

Pfam domain/function: PF02515 CoA_transf_3 [H]

EC number: NA

Molecular weight: Translated: 45266; Mature: 45266

Theoretical pI: Translated: 5.70; Mature: 5.70

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
4.0 %Met     (Translated Protein)
5.0 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
4.0 %Met     (Mature Protein)
5.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLQADAPSPHDDDTAQAAPGAGRPLPLAGIRVLDVTQVMAGPVCTMLLGDLGADVVKIEP
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEHHHHHHHHHHHHHHHHHHHCCCCEEEECC
PGTGDQTRSAMGFRMKGDDSMGFLNMNRNKRSVALNLKNESGRAVFLEMVKTADIVVENY
CCCCCHHHHHCCEEECCCCCCEEEECCCCCEEEEEEEECCCCCEEHHHHHHHHHHHHCCC
RPGVMRKLGIDYETLSRINPRLVYASISGFGQTGPWAQRPGFDLMAQAMSGVMSVTGHPG
CCCHHHHHCCCHHHHHCCCCEEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHEEECCCCC
GPPVKAGVPVADIGCALFATYAILAAYIGCEKTGRGQFIDASLFDSALAFSIWDISEYWG
CCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEHHHHHHHHHHHHHHHHHHCC
KGTIPEPLGTANRMSAPYQAVRAADGYFVMGATNQKLWVQLCTELDRKDLLDDPRFATIS
CCCCCCCCCCCHHCCCCHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHCCCCCCEEHHH
DRLAHRVALIEELEKSFATRTAEDWVATLLARGIPAGRMNTYPEAFESEHGMFREMRIDI
HHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCCCCCCHHHHHHHCCCEEHEEECC
PHPVEGTIPNIGFPVKLRGTPQAVRRPPPLLGQHTHEVLAERGLSDDAIATLAAEGAFAP
CCCCCCCCCCCCCEEEECCCCHHHCCCCCCCCHHHHHHHHHCCCCHHHHHHHHCCCCCCC
>Mature Secondary Structure
MLQADAPSPHDDDTAQAAPGAGRPLPLAGIRVLDVTQVMAGPVCTMLLGDLGADVVKIEP
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEHHHHHHHHHHHHHHHHHHHCCCCEEEECC
PGTGDQTRSAMGFRMKGDDSMGFLNMNRNKRSVALNLKNESGRAVFLEMVKTADIVVENY
CCCCCHHHHHCCEEECCCCCCEEEECCCCCEEEEEEEECCCCCEEHHHHHHHHHHHHCCC
RPGVMRKLGIDYETLSRINPRLVYASISGFGQTGPWAQRPGFDLMAQAMSGVMSVTGHPG
CCCHHHHHCCCHHHHHCCCCEEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHEEECCCCC
GPPVKAGVPVADIGCALFATYAILAAYIGCEKTGRGQFIDASLFDSALAFSIWDISEYWG
CCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEHHHHHHHHHHHHHHHHHHCC
KGTIPEPLGTANRMSAPYQAVRAADGYFVMGATNQKLWVQLCTELDRKDLLDDPRFATIS
CCCCCCCCCCCHHCCCCHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHCCCCCCEEHHH
DRLAHRVALIEELEKSFATRTAEDWVATLLARGIPAGRMNTYPEAFESEHGMFREMRIDI
HHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCCCCCCHHHHHHHCCCEEHEEECC
PHPVEGTIPNIGFPVKLRGTPQAVRRPPPLLGQHTHEVLAERGLSDDAIATLAAEGAFAP
CCCCCCCCCCCCCEEEECCCCHHHCCCCCCCCHHHHHHHHHCCCCHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9205837; 9278503; 8125343 [H]