Click here to switch to the map view.

The map label for this gene is ahpD

Identifier: 162146400

GI number: 162146400

Start: 583925

End: 584470

Strand: Reverse

Name: ahpD

Synonym: GDI_0575

Alternate gene names: 162146400

Gene position: 584470-583925 (Counterclockwise)

Preceding gene: 162146401

Following gene: 162146391

Centisome position: 14.82

GC content: 67.22

Gene sequence:

>546_bases
ATGTCGATCGAAACGCTCAAGGAGCGCCTTCCGGACTACGCGAAGGATCTGAAGCTCAACCTCAGTTCGCTGGCCAACGA
CATCACCCTGTCGCCGCAGCAGCTGGCCGGGACGTTCGTCGCCTCGGCCATCGCGTCACGCAATGCCGACGTCACGCGCG
CCATCGTGGCCGAATACGAATCCGTCCTGTCGCCGCAGGCGCTGACTGCCGCCAAGGCCGCCGCCGCGATCATGGGGCTG
AATAATATCTATTACCGCTTCGTCCACATGGTCGAGGGCGACTACGCCCACATGCCGGCGCGGCTGCGCATGAACGTCAT
CGGCCGCCCGGGCGTCGAGAAGCTGGATTTCGAGCTGTGGTCCCTGGCGGTGTCGGCCATCAACGGCTGCGGCATGTGCG
TCGAGAGCCACGAAAAAGTGGTGCGCGAGGGCGGCCTGTCGGCCGAACAGGTCCAGACCGCGGTGCGCGTCGCGGCGACG
GTCCATGCGGTGGCGGCGACCCTGGACGGGGCCGCTGCGCTGGGCGATCACCCGGCGGCAGGCTGA

Upstream 100 bases:

>100_bases
GCCGATGCGGCCCGCATATTTCCCCATTCCCTTCATGGAGCCGACGCGCGGCGCGCCCGCTGGCCGGTCGCGATCCGCTC
CGTCCCAGCAGGTATCCACC

Downstream 100 bases:

>100_bases
CCCGTGCCCCGGCGGGCGGAACCCGCCTGCCGGGGACGTTCCCAGGGGCCTTTTCCGGGACCTATTTCATCGCACCGTCA
TTTTTCGTGCGGAATGCGGT

Product: alkylhydroperoxidase protein

Products: NA

Alternate protein names: Alkylhydroperoxidase AhpD

Number of amino acids: Translated: 181; Mature: 180

Protein sequence:

>181_residues
MSIETLKERLPDYAKDLKLNLSSLANDITLSPQQLAGTFVASAIASRNADVTRAIVAEYESVLSPQALTAAKAAAAIMGL
NNIYYRFVHMVEGDYAHMPARLRMNVIGRPGVEKLDFELWSLAVSAINGCGMCVESHEKVVREGGLSAEQVQTAVRVAAT
VHAVAATLDGAAALGDHPAAG

Sequences:

>Translated_181_residues
MSIETLKERLPDYAKDLKLNLSSLANDITLSPQQLAGTFVASAIASRNADVTRAIVAEYESVLSPQALTAAKAAAAIMGL
NNIYYRFVHMVEGDYAHMPARLRMNVIGRPGVEKLDFELWSLAVSAINGCGMCVESHEKVVREGGLSAEQVQTAVRVAAT
VHAVAATLDGAAALGDHPAAG
>Mature_180_residues
SIETLKERLPDYAKDLKLNLSSLANDITLSPQQLAGTFVASAIASRNADVTRAIVAEYESVLSPQALTAAKAAAAIMGLN
NIYYRFVHMVEGDYAHMPARLRMNVIGRPGVEKLDFELWSLAVSAINGCGMCVESHEKVVREGGLSAEQVQTAVRVAATV
HAVAATLDGAAALGDHPAAG

Specific function: Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity

COG id: COG2128

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the AhpD family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): AHPD_GLUDA (A9H8D2)

Other databases:

- EMBL:   AM889285
- EMBL:   CP001189
- RefSeq:   YP_001600859.1
- RefSeq:   YP_002275819.1
- ProteinModelPortal:   A9H8D2
- SMR:   A9H8D2
- GeneID:   5792083
- GeneID:   6974832
- GenomeReviews:   AM889285_GR
- GenomeReviews:   CP001189_GR
- KEGG:   gdj:Gdia_1424
- HOGENOM:   HBG414634
- OMA:   PEYAKDL
- ProtClustDB:   CLSK958032
- HAMAP:   MF_01676
- InterPro:   IPR004674
- InterPro:   IPR004675
- InterPro:   IPR003779
- TIGRFAMs:   TIGR00777
- TIGRFAMs:   TIGR00778

Pfam domain/function: PF02627 CMD

EC number: =1.11.1.15

Molecular weight: Translated: 19119; Mature: 18988

Theoretical pI: Translated: 6.00; Mature: 6.00

Prosite motif: NA

Important sites: ACT_SITE 130-130 ACT_SITE 133-133

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSIETLKERLPDYAKDLKLNLSSLANDITLSPQQLAGTFVASAIASRNADVTRAIVAEYE
CCHHHHHHHCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
SVLSPQALTAAKAAAAIMGLNNIYYRFVHMVEGDYAHMPARLRMNVIGRPGVEKLDFELW
HHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCHHHHEEECCCCCCHHHHHHHH
SLAVSAINGCGMCVESHEKVVREGGLSAEQVQTAVRVAATVHAVAATLDGAAALGDHPAA
HHHHHHHHHCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHCCCCCCC
G
C
>Mature Secondary Structure 
SIETLKERLPDYAKDLKLNLSSLANDITLSPQQLAGTFVASAIASRNADVTRAIVAEYE
CHHHHHHHCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
SVLSPQALTAAKAAAAIMGLNNIYYRFVHMVEGDYAHMPARLRMNVIGRPGVEKLDFELW
HHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCHHHHEEECCCCCCHHHHHHHH
SLAVSAINGCGMCVESHEKVVREGGLSAEQVQTAVRVAATVHAVAATLDGAAALGDHPAA
HHHHHHHHHCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHCCCCCCC
G
C

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA