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The map label for this gene is ydeS [H]

Identifier: 162146299

GI number: 162146299

Start: 471871

End: 472374

Strand: Direct

Name: ydeS [H]

Synonym: GDI_0474

Alternate gene names: 162146299

Gene position: 471871-472374 (Clockwise)

Preceding gene: 162146298

Following gene: 162146300

Centisome position: 11.96

GC content: 68.85

Gene sequence:

>504_bases
GTGATCGAGGCGACGCTTGCGATGATGGAGGCGGGCGAGATGCCGAGGGTCGAGGAGGTCGCGCGCCGTGCGGGCGTGCA
GAAATCCTCGATCTATCGCCGGTGGGAGACGATCGGCGGCCTGGTCTTCGAGGCCGTGGGCATGAAGGCGCGCCTGACGA
TGCCCCTGCCCGATACCGGGTCATGCCAGGACGATCTCAGGACCTATCTCGCCTCCATGGTCGCCTTCCATCGCTCCGAC
TTCGGGCGGCTGGTGACGCGCCTGATCGTCGACGTGCCCGAGGCCGTCCGGCGCGAGTTCTGGCGTGCCCGCCTGGACGC
GGCCTCGATCCTGCTGAAAAGGGGCCAGGCGCGGGGGGAGGTGGCGCAGGGGCTGGACGTGCGGCTCGCCACCGAAATGC
TGATCGCGCCGCTCTATTTCCGCGCGCTGGTCTCCGCCGAGGAGGTCGTTCCCGAACTGGCCGATACGATTTCCGGACTC
GTCCTGTCGGGCGCGGCGTCCTGA

Upstream 100 bases:

>100_bases
TGCGAAAAAGCAACTCAGTAGCCTTAAGGATTCTCCGCCGCAGGATTCCGCGGAAATCCGGCGTCGTCCGGGCGGCCGCA
GCGCACGCTTCCACGCGGCG

Downstream 100 bases:

>100_bases
TGCCGACCTTCATCCCGGGCGGCCACACGATCCTGGCCCATTACCCGGGCGATGACGGCGATGTCTGGATCAGCGAGGAC
ATCGTGACGGAAAGCCGCAT

Product: transcription regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 167; Mature: 167

Protein sequence:

>167_residues
MIEATLAMMEAGEMPRVEEVARRAGVQKSSIYRRWETIGGLVFEAVGMKARLTMPLPDTGSCQDDLRTYLASMVAFHRSD
FGRLVTRLIVDVPEAVRREFWRARLDAASILLKRGQARGEVAQGLDVRLATEMLIAPLYFRALVSAEEVVPELADTISGL
VLSGAAS

Sequences:

>Translated_167_residues
MIEATLAMMEAGEMPRVEEVARRAGVQKSSIYRRWETIGGLVFEAVGMKARLTMPLPDTGSCQDDLRTYLASMVAFHRSD
FGRLVTRLIVDVPEAVRREFWRARLDAASILLKRGQARGEVAQGLDVRLATEMLIAPLYFRALVSAEEVVPELADTISGL
VLSGAAS
>Mature_167_residues
MIEATLAMMEAGEMPRVEEVARRAGVQKSSIYRRWETIGGLVFEAVGMKARLTMPLPDTGSCQDDLRTYLASMVAFHRSD
FGRLVTRLIVDVPEAVRREFWRARLDAASILLKRGQARGEVAQGLDVRLATEMLIAPLYFRALVSAEEVVPELADTISGL
VLSGAAS

Specific function: Unknown

COG id: COG1309

COG function: function code K; Transcriptional regulator

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH tetR-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR015893
- InterPro:   IPR011075
- InterPro:   IPR001647 [H]

Pfam domain/function: PF00440 TetR_N [H]

EC number: NA

Molecular weight: Translated: 18382; Mature: 18382

Theoretical pI: Translated: 5.99; Mature: 5.99

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
4.8 %Met     (Translated Protein)
5.4 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
4.8 %Met     (Mature Protein)
5.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIEATLAMMEAGEMPRVEEVARRAGVQKSSIYRRWETIGGLVFEAVGMKARLTMPLPDTG
CCHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCC
SCQDDLRTYLASMVAFHRSDFGRLVTRLIVDVPEAVRREFWRARLDAASILLKRGQARGE
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHCCHHHH
VAQGLDVRLATEMLIAPLYFRALVSAEEVVPELADTISGLVLSGAAS
HHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure
MIEATLAMMEAGEMPRVEEVARRAGVQKSSIYRRWETIGGLVFEAVGMKARLTMPLPDTG
CCHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCC
SCQDDLRTYLASMVAFHRSDFGRLVTRLIVDVPEAVRREFWRARLDAASILLKRGQARGE
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHCCHHHH
VAQGLDVRLATEMLIAPLYFRALVSAEEVVPELADTISGLVLSGAAS
HHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]