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The map label for this gene is traF

Identifier: 162146225

GI number: 162146225

Start: 398827

End: 399456

Strand: Direct

Name: traF

Synonym: GDI_0399

Alternate gene names: NA

Gene position: 398827-399456 (Clockwise)

Preceding gene: 162146224

Following gene: 162146226

Centisome position: 10.11

GC content: 65.71

Gene sequence:

>630_bases
ATGACCCGGCGCGCCTGGTTCTTCACCACGTATTTCGCCGTGCTCGGCGTGGGCGCCTCGCTGGCGTTTCATCCCACACC
GCGCTGGGTCTGGAACGAGACGGCGAGCGTTCCGGTCGGGCTATATCGCATCCAGTCCACCGTCCCGATCCGTGTCGGTG
ACATCGTCGCGCTCCGCCTGCCAGAGCGCGAAGCGACGCTTCTGGCGGCACGTGGTTACCTGCCGTTCGGCGTGCCGCTG
CTCAAGCCTGTGGCAGCACTGGCGGGGCAGAGTGTCTGCCGTATCGGCATCCACGTCACGATCGACGGTAAGACGGCCGG
CGACGCGAAGACTGTCGATCATCGGGGCCGCAAGCTGCCGGTCTGGCAGGGCTGTCAGTATCTCGGGCCGGGGCAGGTGT
TCGTCATGAACGCTGCCGTGCCGACCAGTCTGGACGGACGGTATTTCGGCGTCCTGCCGATGGATACCGTCATCGGTCGC
GCGGTGCCGGTTCATGTTCGCACGGGCGAGGCGGAGCCACTACCGCCGCATTTCGAGTCCCTCCCGGAACCGGATGATCC
CATGCGGAAGGGACTGCTCCTGGCTCCGCCCATGATGCCTGCGAAAGAGAGCGAACCGCCCATTCAATGA

Upstream 100 bases:

>100_bases
ATCATTGGCGGCATCTGCATCACCGGCTCACAGCGGTGCAGGAGCCACGTCTCTACACGCGGGAGCGCCACGAGGCGTGG
CTGCGTAGGAGGGCTGCGTC

Downstream 100 bases:

>100_bases
TGGTCATTCAGCCCTTGAATTCTCTGTCATTCCCACTCTGTCTGAAAGAATTTCTCTCATGAGCCAGATCGGATTTTTCA
CCCGCACATCGGACGGTTTC

Product: conjugal transfer protein TraF

Products: NA

Alternate protein names: Conjugal Transfer Protein TraF; TraF Peptidase; Conjugal Transfer TRAF Transmembrane Protein; Type IV Secretory Pathway Protease TraF-Like Protein; Peptidase; Plasmid Transfer Protein TraF; Type IV Secretory Pathway Protease TraF; Conjugative Transfer Signal Peptidase TraF; Peptidase S; Raf Peptidase. Serine Peptidase. Merops Family; Conjugal Transfer Protein Traf; Conjugal Transfer TraF Transmembrane Protein; Plasmid Transfer Protein Traf; Traf Peptidase Serine Peptidase Merops Family; Transmembrane Anchor Conjugal Transfer Protein; RaF Peptidase. Serine Peptidase. MEROPS Family; TraF Peptidase Serine Peptidase MEROPS Family

Number of amino acids: Translated: 209; Mature: 208

Protein sequence:

>209_residues
MTRRAWFFTTYFAVLGVGASLAFHPTPRWVWNETASVPVGLYRIQSTVPIRVGDIVALRLPEREATLLAARGYLPFGVPL
LKPVAALAGQSVCRIGIHVTIDGKTAGDAKTVDHRGRKLPVWQGCQYLGPGQVFVMNAAVPTSLDGRYFGVLPMDTVIGR
AVPVHVRTGEAEPLPPHFESLPEPDDPMRKGLLLAPPMMPAKESEPPIQ

Sequences:

>Translated_209_residues
MTRRAWFFTTYFAVLGVGASLAFHPTPRWVWNETASVPVGLYRIQSTVPIRVGDIVALRLPEREATLLAARGYLPFGVPL
LKPVAALAGQSVCRIGIHVTIDGKTAGDAKTVDHRGRKLPVWQGCQYLGPGQVFVMNAAVPTSLDGRYFGVLPMDTVIGR
AVPVHVRTGEAEPLPPHFESLPEPDDPMRKGLLLAPPMMPAKESEPPIQ
>Mature_208_residues
TRRAWFFTTYFAVLGVGASLAFHPTPRWVWNETASVPVGLYRIQSTVPIRVGDIVALRLPEREATLLAARGYLPFGVPLL
KPVAALAGQSVCRIGIHVTIDGKTAGDAKTVDHRGRKLPVWQGCQYLGPGQVFVMNAAVPTSLDGRYFGVLPMDTVIGRA
VPVHVRTGEAEPLPPHFESLPEPDDPMRKGLLLAPPMMPAKESEPPIQ

Specific function: Unknown

COG id: COG4959

COG function: function code OU; Type IV secretory pathway, protease TraF

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 22737; Mature: 22606

Theoretical pI: Translated: 9.50; Mature: 9.50

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTRRAWFFTTYFAVLGVGASLAFHPTPRWVWNETASVPVGLYRIQSTVPIRVGDIVALRL
CCCEEHHHHHHHHHHHCCCEEEECCCCCEECCCCCCCCEEEEEECCCCCEEECCEEEEEC
PEREATLLAARGYLPFGVPLLKPVAALAGQSVCRIGIHVTIDGKTAGDAKTVDHRGRKLP
CCCCEEEEEECCCCCCCCHHHHHHHHHCCCCEEEEEEEEEECCCCCCCCCCHHHCCCCCC
VWQGCQYLGPGQVFVMNAAVPTSLDGRYFGVLPMDTVIGRAVPVHVRTGEAEPLPPHFES
HHHCCEECCCCEEEEEECCCCCCCCCCEEEEECHHHHHCCEEEEEEECCCCCCCCCHHHC
LPEPDDPMRKGLLLAPPMMPAKESEPPIQ
CCCCCCHHHCCEEECCCCCCCCCCCCCCC
>Mature Secondary Structure 
TRRAWFFTTYFAVLGVGASLAFHPTPRWVWNETASVPVGLYRIQSTVPIRVGDIVALRL
CCEEHHHHHHHHHHHCCCEEEECCCCCEECCCCCCCCEEEEEECCCCCEEECCEEEEEC
PEREATLLAARGYLPFGVPLLKPVAALAGQSVCRIGIHVTIDGKTAGDAKTVDHRGRKLP
CCCCEEEEEECCCCCCCCHHHHHHHHHCCCCEEEEEEEEEECCCCCCCCCCHHHCCCCCC
VWQGCQYLGPGQVFVMNAAVPTSLDGRYFGVLPMDTVIGRAVPVHVRTGEAEPLPPHFES
HHHCCEECCCCEEEEEECCCCCCCCCCEEEEECHHHHHCCEEEEEEECCCCCCCCCHHHC
LPEPDDPMRKGLLLAPPMMPAKESEPPIQ
CCCCCCHHHCCEEECCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA