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The map label for this gene is bphP [H]

Identifier: 162146088

GI number: 162146088

Start: 267012

End: 268202

Strand: Reverse

Name: bphP [H]

Synonym: GDI_0257

Alternate gene names: 162146088

Gene position: 268202-267012 (Counterclockwise)

Preceding gene: 162146089

Following gene: 162146087

Centisome position: 6.8

GC content: 61.63

Gene sequence:

>1191_bases
ATGGTAAAATATCTCGACGGCATCAGGGTCGCGGGGCGCGTTCCGGCTCTTCTGAAGATTCTCGATGTCGTGCAGCACAC
GACGTCCCTGCGCTTCGCCGCGGTCGCACGCGTCACGCCGGAATACTGGCTGGCCTGCGCCGTACGGGACGGCGTCGATC
TGGGGCTGGAAATCGGGGACGAACTGCCCCTGGAAACGACGATCAGCCATGACGTCCTGCACCGGGGGGAGGCCGTCGTG
ATCAACCACGTCGATGCCGATCCGGCCTACGCCCGCCATGTATCCCCCCGGCAGTATCATTTTCAAAGCTATATCGTGGT
GCCGGTCCGCCTGCCCGACGGCACGTTCTTCGGCACGCTGTGCGCGGCCGATCCGGCGCCGCATGACCTGGACCGGCCCG
AAATCCTTGCCATGTTCCGGCTGTTCGCCGACCTGGTGGCCTTCCATGTCGATGCCAGTTCCCGCCTGGCCGAGAACGAG
GCGATCCTGTCGCACGAGCGCACCCAGTCCGAACTGCGGGAACAGTTCATCGCCGTCCTGGGTCACGATCTGCGGAACCC
GTTGATGTCGATCGAATCCGGGACACGCATGCTGCTTCGCTACCCGGAACGGGCGGCCGAGTTGGTGCCCCATATCCAGA
AGAGCACCGCCCGGATGGGGGCGCTGATCAACGACCTGATGGATTTCGCCCGGGGGCGGCTGGGGGGCGGCATTACCCTG
CAACTGAAGGTCGAACATGCCTTGCAGGCCATCCTGGAACAGATCGTCCAGGAGGTTAAGACCACCCGGCCGGAACGACG
TATCGAGACCCGATTCCAGATGGAGCATGCCGTGACATGCGATACCGTCCGCCTCGCCCAGTTGTTTTCCAACCTGCTGA
GCAACGCCGTCACGCATGGAGACCCGGACAAGCCGATTGTCGTCAAGGCGAGCACAAATGAAAAATTCTTTGAATTGTCG
GTATCCAACGCGGGGAAACCCATTCCGCCGGAAGCCCATGAGAAGCTTTTTCATCCGTTCTTCCGGGGAGGCGACCGGCC
GAGCCAGCAGGGACTGGGTCTCGGCCTCTATATCGTATCCGAAATCGCCAAGGCCCACCGAGGAAGGCTGGCCGTTACAT
CGGGCAATGACGAAACGTGCTTTACGTTCCGCCTGCCTTATGTATTTTCCGTTACTGATCGGAGCGCTTGA

Upstream 100 bases:

>100_bases
ATGGATGGCCGACGGGTAGCATCCATCCCCTGTATCATGCCAATGTCATCATTGCGGTATCGATCGGCCGTTTCATTTCG
CGCAGCGACTGTTAGGTGAC

Downstream 100 bases:

>100_bases
AACAGCATCCGAAGTATCCGTCCTTTCCCGAGAGGCGTGATGGCCCGTTATTCCCCGCACATCCCCCCGCGCATCGTCAT
TGCCGAAGACGAGGTCCTGA

Product: sensor histidine kinase

Products: NA

Alternate protein names: Phytochrome-like protein [H]

Number of amino acids: Translated: 396; Mature: 396

Protein sequence:

>396_residues
MVKYLDGIRVAGRVPALLKILDVVQHTTSLRFAAVARVTPEYWLACAVRDGVDLGLEIGDELPLETTISHDVLHRGEAVV
INHVDADPAYARHVSPRQYHFQSYIVVPVRLPDGTFFGTLCAADPAPHDLDRPEILAMFRLFADLVAFHVDASSRLAENE
AILSHERTQSELREQFIAVLGHDLRNPLMSIESGTRMLLRYPERAAELVPHIQKSTARMGALINDLMDFARGRLGGGITL
QLKVEHALQAILEQIVQEVKTTRPERRIETRFQMEHAVTCDTVRLAQLFSNLLSNAVTHGDPDKPIVVKASTNEKFFELS
VSNAGKPIPPEAHEKLFHPFFRGGDRPSQQGLGLGLYIVSEIAKAHRGRLAVTSGNDETCFTFRLPYVFSVTDRSA

Sequences:

>Translated_396_residues
MVKYLDGIRVAGRVPALLKILDVVQHTTSLRFAAVARVTPEYWLACAVRDGVDLGLEIGDELPLETTISHDVLHRGEAVV
INHVDADPAYARHVSPRQYHFQSYIVVPVRLPDGTFFGTLCAADPAPHDLDRPEILAMFRLFADLVAFHVDASSRLAENE
AILSHERTQSELREQFIAVLGHDLRNPLMSIESGTRMLLRYPERAAELVPHIQKSTARMGALINDLMDFARGRLGGGITL
QLKVEHALQAILEQIVQEVKTTRPERRIETRFQMEHAVTCDTVRLAQLFSNLLSNAVTHGDPDKPIVVKASTNEKFFELS
VSNAGKPIPPEAHEKLFHPFFRGGDRPSQQGLGLGLYIVSEIAKAHRGRLAVTSGNDETCFTFRLPYVFSVTDRSA
>Mature_396_residues
MVKYLDGIRVAGRVPALLKILDVVQHTTSLRFAAVARVTPEYWLACAVRDGVDLGLEIGDELPLETTISHDVLHRGEAVV
INHVDADPAYARHVSPRQYHFQSYIVVPVRLPDGTFFGTLCAADPAPHDLDRPEILAMFRLFADLVAFHVDASSRLAENE
AILSHERTQSELREQFIAVLGHDLRNPLMSIESGTRMLLRYPERAAELVPHIQKSTARMGALINDLMDFARGRLGGGITL
QLKVEHALQAILEQIVQEVKTTRPERRIETRFQMEHAVTCDTVRLAQLFSNLLSNAVTHGDPDKPIVVKASTNEKFFELS
VSNAGKPIPPEAHEKLFHPFFRGGDRPSQQGLGLGLYIVSEIAKAHRGRLAVTSGNDETCFTFRLPYVFSVTDRSA

Specific function: Photoreceptor which exists in two forms that are reversibly interconvertible by light:the R form that absorbs maximally in the red region of the spectrum and the FR form that absorbs maximally in the far-red region [H]

COG id: COG4251

COG function: function code T; Bacteriophytochrome (light-regulated signal transduction histidine kinase)

Gene ontology:

Cell location: Integral Membrane Protein. Inner Membrane [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 histidine kinase domain [H]

Homologues:

Organism=Escherichia coli, GI87082128, Length=226, Percent_Identity=30.0884955752212, Blast_Score=83, Evalue=3e-17,
Organism=Escherichia coli, GI1786912, Length=301, Percent_Identity=27.906976744186, Blast_Score=82, Evalue=9e-17,
Organism=Escherichia coli, GI1786783, Length=226, Percent_Identity=29.646017699115, Blast_Score=80, Evalue=2e-16,
Organism=Escherichia coli, GI145693157, Length=258, Percent_Identity=27.5193798449612, Blast_Score=76, Evalue=5e-15,
Organism=Escherichia coli, GI87081816, Length=227, Percent_Identity=29.5154185022026, Blast_Score=75, Evalue=7e-15,
Organism=Escherichia coli, GI1789149, Length=246, Percent_Identity=26.0162601626016, Blast_Score=73, Evalue=3e-14,
Organism=Escherichia coli, GI1788393, Length=233, Percent_Identity=26.6094420600858, Blast_Score=72, Evalue=7e-14,
Organism=Escherichia coli, GI1789808, Length=200, Percent_Identity=29, Blast_Score=70, Evalue=2e-13,
Organism=Escherichia coli, GI1790861, Length=207, Percent_Identity=28.9855072463768, Blast_Score=69, Evalue=6e-13,
Organism=Escherichia coli, GI1790436, Length=250, Percent_Identity=26, Blast_Score=66, Evalue=3e-12,
Organism=Escherichia coli, GI1786600, Length=222, Percent_Identity=28.8288288288288, Blast_Score=64, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003594
- InterPro:   IPR003018
- InterPro:   IPR013654
- InterPro:   IPR016132
- InterPro:   IPR001294
- InterPro:   IPR013515
- InterPro:   IPR003661
- InterPro:   IPR005467
- InterPro:   IPR009082 [H]

Pfam domain/function: PF01590 GAF; PF02518 HATPase_c; PF00512 HisKA; PF08446 PAS_2; PF00360 Phytochrome [H]

EC number: =2.7.13.3 [H]

Molecular weight: Translated: 44074; Mature: 44074

Theoretical pI: Translated: 6.76; Mature: 6.76

Prosite motif: PS50109 HIS_KIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVKYLDGIRVAGRVPALLKILDVVQHTTSLRFAAVARVTPEYWLACAVRDGVDLGLEIGD
CCCCCCCEEHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHEEEECCCCEECCCCCC
ELPLETTISHDVLHRGEAVVINHVDADPAYARHVSPRQYHFQSYIVVPVRLPDGTFFGTL
CCCCHHHHHHHHHHCCCEEEEEECCCCCHHHHCCCCHHEEEEEEEEEEEECCCCCEEEEE
CAADPAPHDLDRPEILAMFRLFADLVAFHVDASSRLAENEAILSHERTQSELREQFIAVL
ECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
GHDLRNPLMSIESGTRMLLRYPERAAELVPHIQKSTARMGALINDLMDFARGRLGGGITL
HHHHHHHHHHHCCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEE
QLKVEHALQAILEQIVQEVKTTRPERRIETRFQMEHAVTCDTVRLAQLFSNLLSNAVTHG
EEEHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCC
DPDKPIVVKASTNEKFFELSVSNAGKPIPPEAHEKLFHPFFRGGDRPSQQGLGLGLYIVS
CCCCCEEEEECCCCEEEEEEECCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCHHHHHHH
EIAKAHRGRLAVTSGNDETCFTFRLPYVFSVTDRSA
HHHHHHCCEEEEECCCCCEEEEEECCEEEEECCCCC
>Mature Secondary Structure
MVKYLDGIRVAGRVPALLKILDVVQHTTSLRFAAVARVTPEYWLACAVRDGVDLGLEIGD
CCCCCCCEEHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHEEEECCCCEECCCCCC
ELPLETTISHDVLHRGEAVVINHVDADPAYARHVSPRQYHFQSYIVVPVRLPDGTFFGTL
CCCCHHHHHHHHHHCCCEEEEEECCCCCHHHHCCCCHHEEEEEEEEEEEECCCCCEEEEE
CAADPAPHDLDRPEILAMFRLFADLVAFHVDASSRLAENEAILSHERTQSELREQFIAVL
ECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
GHDLRNPLMSIESGTRMLLRYPERAAELVPHIQKSTARMGALINDLMDFARGRLGGGITL
HHHHHHHHHHHCCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEE
QLKVEHALQAILEQIVQEVKTTRPERRIETRFQMEHAVTCDTVRLAQLFSNLLSNAVTHG
EEEHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCC
DPDKPIVVKASTNEKFFELSVSNAGKPIPPEAHEKLFHPFFRGGDRPSQQGLGLGLYIVS
CCCCCEEEEECCCCEEEEEEECCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCHHHHHHH
EIAKAHRGRLAVTSGNDETCFTFRLPYVFSVTDRSA
HHHHHHCCEEEEECCCCCEEEEEECCEEEEECCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 10984043 [H]