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The map label for this gene is ytfA [H]

Identifier: 162145989

GI number: 162145989

Start: 164714

End: 165385

Strand: Direct

Name: ytfA [H]

Synonym: GDI_0156

Alternate gene names: 162145989

Gene position: 164714-165385 (Clockwise)

Preceding gene: 162145988

Following gene: 162145994

Centisome position: 4.18

GC content: 55.21

Gene sequence:

>672_bases
ATGGAAAGCAGGAAAAAGCGGGGCAATCCAGACGGGCAGGCCGATCCGACCGGTCCCCGCAAGCGAGACGCCGAAGCAAC
CCAGAAGCGCATTCTGTCATCGGCCAGGCGTGAATTCGCAACCAGCGGCCTGGCCGGCGCGCGCGTCGATATCATCGCGG
AGAAAGCCGAAGCCAAAAAAAGGATGATCTATCATTATTTCGGGAACAAGGAGGCGCTGTTCACCCGGATCCTGGAAGAT
GCCTATATCGATCTCTACCAGGCCGAGCAGAAACTGGATCTCGACCATCTCGATCCCAGGTCGGCGCTGGATCATTTCGT
CAGGTTCACGTGGAACTATTACCTGAAGAATCCCGATTTCATCACCCTCGTCAACAGCGAGAACCTGCACTGCGGCGTGC
ATCTGCAGGATTCGGCCGTCCTGCGCAGCGTCAGCCAGAACCGCCTGCGCATGCTGGAAAACCTCCTGAAACGCGGCGAG
AAGGACGGTGTCTTCCGTCCCGGAATCGATGCCATGCAGTTGCATATTTCCATCGCCGCGGTCGGATATTATTATATAAC
CAACCGATATACCGGAATCATTATTTTCAAGCGCGATTTCATGTCCAAGGACATGCTGGACAAGCGCGTCGATTTCAATG
TCGAGAGTATCTTGCGCATCGTCCAGGCATGA

Upstream 100 bases:

>100_bases
CAGCCATAATCCCACAATCAGCCTGCCCGCCGTGGCCGCCTGATAACCTCGAACCCTTCGAGGAACGGTGCTCCTACACC
ACACCTCGGGACACAGCCTG

Downstream 100 bases:

>100_bases
TCCGCCTATTGTCCCTGCCCGGGCATGCAATCAAGATACGCCTCGCTGGCATAGCGTCGCATCATGCGGTGACTGGTAAA
GATCGACCCGCATTTCGAGA

Product: TetR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 223; Mature: 223

Protein sequence:

>223_residues
MESRKKRGNPDGQADPTGPRKRDAEATQKRILSSARREFATSGLAGARVDIIAEKAEAKKRMIYHYFGNKEALFTRILED
AYIDLYQAEQKLDLDHLDPRSALDHFVRFTWNYYLKNPDFITLVNSENLHCGVHLQDSAVLRSVSQNRLRMLENLLKRGE
KDGVFRPGIDAMQLHISIAAVGYYYITNRYTGIIIFKRDFMSKDMLDKRVDFNVESILRIVQA

Sequences:

>Translated_223_residues
MESRKKRGNPDGQADPTGPRKRDAEATQKRILSSARREFATSGLAGARVDIIAEKAEAKKRMIYHYFGNKEALFTRILED
AYIDLYQAEQKLDLDHLDPRSALDHFVRFTWNYYLKNPDFITLVNSENLHCGVHLQDSAVLRSVSQNRLRMLENLLKRGE
KDGVFRPGIDAMQLHISIAAVGYYYITNRYTGIIIFKRDFMSKDMLDKRVDFNVESILRIVQA
>Mature_223_residues
MESRKKRGNPDGQADPTGPRKRDAEATQKRILSSARREFATSGLAGARVDIIAEKAEAKKRMIYHYFGNKEALFTRILED
AYIDLYQAEQKLDLDHLDPRSALDHFVRFTWNYYLKNPDFITLVNSENLHCGVHLQDSAVLRSVSQNRLRMLENLLKRGE
KDGVFRPGIDAMQLHISIAAVGYYYITNRYTGIIIFKRDFMSKDMLDKRVDFNVESILRIVQA

Specific function: Unknown

COG id: COG1309

COG function: function code K; Transcriptional regulator

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR015893
- InterPro:   IPR011075 [H]

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 25760; Mature: 25760

Theoretical pI: Translated: 9.72; Mature: 9.72

Prosite motif: PS50977 HTH_TETR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MESRKKRGNPDGQADPTGPRKRDAEATQKRILSSARREFATSGLAGARVDIIAEKAEAKK
CCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
RMIYHYFGNKEALFTRILEDAYIDLYQAEQKLDLDHLDPRSALDHFVRFTWNYYLKNPDF
HEEEEEECCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHEEEECCCCE
ITLVNSENLHCGVHLQDSAVLRSVSQNRLRMLENLLKRGEKDGVFRPGIDAMQLHISIAA
EEEECCCCEEEEEEECHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHEEEEHHH
VGYYYITNRYTGIIIFKRDFMSKDMLDKRVDFNVESILRIVQA
HHEEEEECCEEEEEEEEHHHHCHHHHHHHCCCCHHHHHHHHCC
>Mature Secondary Structure
MESRKKRGNPDGQADPTGPRKRDAEATQKRILSSARREFATSGLAGARVDIIAEKAEAKK
CCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
RMIYHYFGNKEALFTRILEDAYIDLYQAEQKLDLDHLDPRSALDHFVRFTWNYYLKNPDF
HEEEEEECCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHEEEECCCCE
ITLVNSENLHCGVHLQDSAVLRSVSQNRLRMLENLLKRGEKDGVFRPGIDAMQLHISIAA
EEEECCCCEEEEEEECHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHEEEEHHH
VGYYYITNRYTGIIIFKRDFMSKDMLDKRVDFNVESILRIVQA
HHEEEEECCEEEEEEEEHHHHCHHHHHHHCCCCHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7610040; 9278503 [H]