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The map label for this gene is yybE [H]

Identifier: 162145973

GI number: 162145973

Start: 148647

End: 149372

Strand: Reverse

Name: yybE [H]

Synonym: GDI_0139

Alternate gene names: 162145973

Gene position: 149372-148647 (Counterclockwise)

Preceding gene: 162145976

Following gene: 162145961

Centisome position: 3.79

GC content: 62.12

Gene sequence:

>726_bases
ATGTTCGGTCAGGAATTCATCCGCTGGAGCCAGACGATCCTGGACAATGTGGCAGGCATGAACACCCGCGCTCGGCGGAC
GGGCAAGGGCGAGAATGGCCAGATCTCTATCGGTATCCAGACCTGCGTCCTGCCCGGAAGACTCTCGACCTTCACGGCAG
ACTTCCGCGCCGCTCACCCCGATATCGTCTTTCGCTATTCCGAGGGTACAGGCAAGAGGCTGCTGCGCCGGCTCCAGCGC
GGGCAGATCGATTTCGCGGTCGTCACCCGCCGCAACCTGGCGCCTGCCTTGCGGGTCACGCCTCTGTGGAGCGACCGCAT
CGTGGCCTCACTCCCCCCTGATCATCCCCTGGCAACACGACCGGAAGTATCCTGGACAGACCTGCGTCACGAGACGTTTC
TCACGGGACGCGACAACGCGGGTCAGGACTTCGAGGCACTCATCCAGCGCAAGCTCGGGGAAACCGGCATCCGCCCAAAG
ATCCAGCGTCATGATATCGGCAGCAACAGGATCGTCGCACTCGTCCAGAACAACGAAGGCGTTGCCCTGCTTCCCGCCTC
GTGGCTACCGCTGATCCGCGATCGGCATGGCCATGACATCGCGATCACGGAAATCCGGGACGCGGGTGGCTCCTCCCATC
TGGAATTCGGGATCGTCTGGCGACCCGACAATGAAAATCCCTGCGCCCTGAGTTTCGCCCGCTATATCGAAAGCCACAGA
CCATGA

Upstream 100 bases:

>100_bases
AGGTCACCGACAATCGGCCGTCAGCCGATCCCTGCATAACCTGGAGGAGCGGCTTGATGTCAGGCTGTTCATCCGTTCGC
CGGCGGGCGCTGCTCCAACC

Downstream 100 bases:

>100_bases
AGCTATTTTTCTGACGACGTTCCTTTCCTCTTTCTCCGCGCCCTGGCGAACCCCTTGTCCGATATCATGAACTGCCGGAG
CATGGGCGCGACCAGTCGGG

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 241; Mature: 241

Protein sequence:

>241_residues
MFGQEFIRWSQTILDNVAGMNTRARRTGKGENGQISIGIQTCVLPGRLSTFTADFRAAHPDIVFRYSEGTGKRLLRRLQR
GQIDFAVVTRRNLAPALRVTPLWSDRIVASLPPDHPLATRPEVSWTDLRHETFLTGRDNAGQDFEALIQRKLGETGIRPK
IQRHDIGSNRIVALVQNNEGVALLPASWLPLIRDRHGHDIAITEIRDAGGSSHLEFGIVWRPDNENPCALSFARYIESHR
P

Sequences:

>Translated_241_residues
MFGQEFIRWSQTILDNVAGMNTRARRTGKGENGQISIGIQTCVLPGRLSTFTADFRAAHPDIVFRYSEGTGKRLLRRLQR
GQIDFAVVTRRNLAPALRVTPLWSDRIVASLPPDHPLATRPEVSWTDLRHETFLTGRDNAGQDFEALIQRKLGETGIRPK
IQRHDIGSNRIVALVQNNEGVALLPASWLPLIRDRHGHDIAITEIRDAGGSSHLEFGIVWRPDNENPCALSFARYIESHR
P
>Mature_241_residues
MFGQEFIRWSQTILDNVAGMNTRARRTGKGENGQISIGIQTCVLPGRLSTFTADFRAAHPDIVFRYSEGTGKRLLRRLQR
GQIDFAVVTRRNLAPALRVTPLWSDRIVASLPPDHPLATRPEVSWTDLRHETFLTGRDNAGQDFEALIQRKLGETGIRPK
IQRHDIGSNRIVALVQNNEGVALLPASWLPLIRDRHGHDIAITEIRDAGGSSHLEFGIVWRPDNENPCALSFARYIESHR
P

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1787879, Length=187, Percent_Identity=27.2727272727273, Blast_Score=69, Evalue=3e-13,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 27111; Mature: 27111

Theoretical pI: Translated: 10.50; Mature: 10.50

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
0.8 %Met     (Translated Protein)
1.7 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
0.8 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFGQEFIRWSQTILDNVAGMNTRARRTGKGENGQISIGIQTCVLPGRLSTFTADFRAAHP
CCCHHHHHHHHHHHHHHCCCCCHHHHCCCCCCCEEEEEEEEEECCCCCHHEEHHHHCCCC
DIVFRYSEGTGKRLLRRLQRGQIDFAVVTRRNLAPALRVTPLWSDRIVASLPPDHPLATR
CEEEEECCCCHHHHHHHHHHCCCEEEEEECCCCCCEEEEEECCCCCEEEECCCCCCCCCC
PEVSWTDLRHETFLTGRDNAGQDFEALIQRKLGETGIRPKIQRHDIGSNRIVALVQNNEG
CCCCHHHCCCEEEEECCCCCCCHHHHHHHHHHCCCCCCCCEEECCCCCCEEEEEEECCCC
VALLPASWLPLIRDRHGHDIAITEIRDAGGSSHLEFGIVWRPDNENPCALSFARYIESHR
EEEECCCCCHHHHCCCCCEEEEEEEECCCCCCCEEEEEEECCCCCCCHHHHHHHHHHHCC
P
C
>Mature Secondary Structure
MFGQEFIRWSQTILDNVAGMNTRARRTGKGENGQISIGIQTCVLPGRLSTFTADFRAAHP
CCCHHHHHHHHHHHHHHCCCCCHHHHCCCCCCCEEEEEEEEEECCCCCHHEEHHHHCCCC
DIVFRYSEGTGKRLLRRLQRGQIDFAVVTRRNLAPALRVTPLWSDRIVASLPPDHPLATR
CEEEEECCCCHHHHHHHHHHCCCEEEEEECCCCCCEEEEEECCCCCEEEECCCCCCCCCC
PEVSWTDLRHETFLTGRDNAGQDFEALIQRKLGETGIRPKIQRHDIGSNRIVALVQNNEG
CCCCHHHCCCEEEEECCCCCCCHHHHHHHHHHCCCCCCCCEEECCCCCCEEEEEEECCCC
VALLPASWLPLIRDRHGHDIAITEIRDAGGSSHLEFGIVWRPDNENPCALSFARYIESHR
EEEECCCCCHHHHCCCCCEEEEEEEECCCCCCCEEEEEEECCCCCCCHHHHHHHHHHHCC
P
C

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7584024; 9384377 [H]