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The map label for this gene is trbF [H]

Identifier: 162145970

GI number: 162145970

Start: 145561

End: 146244

Strand: Direct

Name: trbF [H]

Synonym: GDI_0136

Alternate gene names: 162145970

Gene position: 145561-146244 (Clockwise)

Preceding gene: 162145969

Following gene: 162145971

Centisome position: 3.69

GC content: 65.79

Gene sequence:

>684_bases
ATGTTCCGTCGCTCCACCACACGCTACGGGACCATGCCCGAGCCGGTGACACCCTATCAGAAAGCAGCGCAGATCTGGGA
CGAGCGCATCGGCTCCGCCCGCGTACAGGCCCGAAACTGGAGGCTGATTGCCTTTGGCTCCCTGTTCCTGTCAGCGGGGC
TCGGGGTCGGGCTGGTCTGGCAATCCGCGCGCGGCACCATCACGCCGTGGGTGGTGCAGGTGGACCGGCTGGGTCAGGCG
CAGGTCGTAGCCTCCGCGACAGCGGGCTATATTCCCGCCGATCCGCAGATTGCCTGGTATCTGGCGCAGTTCGTCCACGA
CGTGCGCTCCCTGTCGTCGGACGCGGTGGTGGTCCGGCACAACTGGCTACGCGCCTATGATTTCACCACCCCCTCCGGCG
CGGTGGCGCTGAATGATTATGCCCGCCTGAATGATCCGTTTTCACGGATCGGGCATGAGCAGGTCGAGGTGGACATCGCC
TCGGTCATCCGGGCCTCGCCCGGCAGCTTCCGCGTGGCCTGGACCGAGCGCCATTACCGCGACGGCGCGTTCACCGGCAC
CGAGCGCTGGACCGCGATCGTCTCGGTCGTTCTGCGCACGCCGCGTGACGCCGATCACCTGCGGAAAAATCCCCTCGGCA
TCTACGTCTCCGCCATCAACTGGTCGAAGGAACTCGGACAATGA

Upstream 100 bases:

>100_bases
GCCGCAATGCCGCAGCCCATGCCGCTGAAGCCGCCCATGTCATCCGCTCCGCCGATGGCGGAGGCGGGTCGGCATCCATC
GACCTCTCGGAGAAAGAATA

Downstream 100 bases:

>100_bases
TCCGCATGGTTATGCGCGCCGTTCCAGTGGCGCTGCTCGCCCTGTCCGCCTGCGCGGGGCAGTATCATCTGCCTGTCATT
CGCTACGATGATGCCGTGCA

Product: conjugal transfer protein TrbF

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 227; Mature: 227

Protein sequence:

>227_residues
MFRRSTTRYGTMPEPVTPYQKAAQIWDERIGSARVQARNWRLIAFGSLFLSAGLGVGLVWQSARGTITPWVVQVDRLGQA
QVVASATAGYIPADPQIAWYLAQFVHDVRSLSSDAVVVRHNWLRAYDFTTPSGAVALNDYARLNDPFSRIGHEQVEVDIA
SVIRASPGSFRVAWTERHYRDGAFTGTERWTAIVSVVLRTPRDADHLRKNPLGIYVSAINWSKELGQ

Sequences:

>Translated_227_residues
MFRRSTTRYGTMPEPVTPYQKAAQIWDERIGSARVQARNWRLIAFGSLFLSAGLGVGLVWQSARGTITPWVVQVDRLGQA
QVVASATAGYIPADPQIAWYLAQFVHDVRSLSSDAVVVRHNWLRAYDFTTPSGAVALNDYARLNDPFSRIGHEQVEVDIA
SVIRASPGSFRVAWTERHYRDGAFTGTERWTAIVSVVLRTPRDADHLRKNPLGIYVSAINWSKELGQ
>Mature_227_residues
MFRRSTTRYGTMPEPVTPYQKAAQIWDERIGSARVQARNWRLIAFGSLFLSAGLGVGLVWQSARGTITPWVVQVDRLGQA
QVVASATAGYIPADPQIAWYLAQFVHDVRSLSSDAVVVRHNWLRAYDFTTPSGAVALNDYARLNDPFSRIGHEQVEVDIA
SVIRASPGSFRVAWTERHYRDGAFTGTERWTAIVSVVLRTPRDADHLRKNPLGIYVSAINWSKELGQ

Specific function: Unknown

COG id: COG3701

COG function: function code U; Type IV secretory pathway, TrbF components

Gene ontology:

Cell location: Cell membrane; Single-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the trbF family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR007430 [H]

Pfam domain/function: PF04335 VirB8 [H]

EC number: NA

Molecular weight: Translated: 25385; Mature: 25385

Theoretical pI: Translated: 10.18; Mature: 10.18

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
0.9 %Met     (Translated Protein)
0.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
0.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFRRSTTRYGTMPEPVTPYQKAAQIWDERIGSARVQARNWRLIAFGSLFLSAGLGVGLVW
CCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCEEEECCEEEEEEHHHHHHCCCCEEEEE
QSARGTITPWVVQVDRLGQAQVVASATAGYIPADPQIAWYLAQFVHDVRSLSSDAVVVRH
ECCCCCCCHHEEEECCCCCHHEEEHHHCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEE
NWLRAYDFTTPSGAVALNDYARLNDPFSRIGHEQVEVDIASVIRASPGSFRVAWTERHYR
CEEEEECCCCCCCCEEECCHHHCCCHHHHCCCHHHHHHHHHHHHCCCCCEEEEEECCCCC
DGAFTGTERWTAIVSVVLRTPRDADHLRKNPLGIYVSAINWSKELGQ
CCCCCCHHHHHHHHHHHHHCCCCHHHHHCCCCEEEEEEECCHHHHCC
>Mature Secondary Structure
MFRRSTTRYGTMPEPVTPYQKAAQIWDERIGSARVQARNWRLIAFGSLFLSAGLGVGLVW
CCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCEEEECCEEEEEEHHHHHHCCCCEEEEE
QSARGTITPWVVQVDRLGQAQVVASATAGYIPADPQIAWYLAQFVHDVRSLSSDAVVVRH
ECCCCCCCHHEEEECCCCCHHEEEHHHCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEE
NWLRAYDFTTPSGAVALNDYARLNDPFSRIGHEQVEVDIASVIRASPGSFRVAWTERHYR
CEEEEECCCCCCCCEEECCHHHCCCHHHHCCCHHHHHHHHHHHHCCCCCEEEEEECCCCC
DGAFTGTERWTAIVSVVLRTPRDADHLRKNPLGIYVSAINWSKELGQ
CCCCCCHHHHHHHHHHHHHCCCCHHHHHCCCCEEEEEEECCHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8763954 [H]