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The map label for this gene is 162145898

Identifier: 162145898

GI number: 162145898

Start: 66416

End: 67072

Strand: Reverse

Name: 162145898

Synonym: GDI_0060

Alternate gene names: NA

Gene position: 67072-66416 (Counterclockwise)

Preceding gene: 162145899

Following gene: 162145897

Centisome position: 1.7

GC content: 64.38

Gene sequence:

>657_bases
ATGCACGCCCCGCCCGATAATGCGACCGAAGACGCGTTGGTTCCCATTTCCGCCTTGCAGCATCATCTGTTCTGCCCCAG
GCAATGCGCGCTGATCCATGTCGAGCGGATCTGGGCGGAAAATGGTGCGACGGCGGAGGGCCGCATTTTGCACGAACGGG
TGGATGACGGCCGTCCCGATCGCCGGACAGGCGTACGCACGGTCCGCGCGCTGACGATACGGTCGCTGACGCTGGGTGTC
TTCGGCAAGGCCGATGCAGTGGAATTCCACGGTGTCGAGACCGCCGCCGTGCCCTATCCGGTCGAATACAAGCGCGGCCG
CCCCAAGGCCCATCGCGCCGATGAGGTCCAGCTTTGCGCCCAGGCCATCTGCCTGGAAGACATGTTCGGACATTCCGTGC
CGGAGGGCGCGTTGTTTTACGGCCAGCCCCGGCGGCGCACGGTGGTGGTGTTCGATGGTGCCCTGCGTACGCTGACCGAG
CAAACCGCGCGGAAGGTCCGCGCCATGATCGCGGACTGCCTGACTCCACCGCCTGTCTACAAGGCCTCTTGCAATCAATG
CTCCCTGCAGCACGCCTGCCAGCCGCGCCGATTGGAAAAGCCTCCCTCAATCGGCCGCTGGTTTGCGACACAACTGCTGG
AAGAAGACAACGCGTGA

Upstream 100 bases:

>100_bases
ACAACTGGCCGCCTGCCCGGGCCTGGGGCGATTATCAGGTGCTGATCGACCGGGACGCAGTACCGGCGGGAATCGAGATC
ATCGAACGGTAAGCGCCCGG

Downstream 100 bases:

>100_bases
TGCGCCGCCACCTCAATACCATCTATGTGACGACCGAGGATGCCTGGCTGCGCAAGGATGGCGCCAATGTGGTGGTCGAA
GTCGAGGGCCAGGAGCGCGG

Product: hypothetical protein

Products: NA

Alternate protein names: CRISPR-Associated Exonuclease Cas4 Family Protein; RecB Family Exonuclease; CRISPR-Associated Cas1/Cas4 Family Protein; CRISPR-Associated Exonuclease Cas4 Family; Endonuclease; Exonuclease RecB Family Protein; CRISPR-Associated Cas1 Family Protein; CRISPR-Associated Protein; Protein Be Involved In DNA Repair; Cas4 Family CRISPR-Associated Protein; Exonuclease N; PE-PGRS Family Protein; CRISPR-Associated RecB Family Exonuclease Cas4b; RecB Family Exonuclease Protein

Number of amino acids: Translated: 218; Mature: 218

Protein sequence:

>218_residues
MHAPPDNATEDALVPISALQHHLFCPRQCALIHVERIWAENGATAEGRILHERVDDGRPDRRTGVRTVRALTIRSLTLGV
FGKADAVEFHGVETAAVPYPVEYKRGRPKAHRADEVQLCAQAICLEDMFGHSVPEGALFYGQPRRRTVVVFDGALRTLTE
QTARKVRAMIADCLTPPPVYKASCNQCSLQHACQPRRLEKPPSIGRWFATQLLEEDNA

Sequences:

>Translated_218_residues
MHAPPDNATEDALVPISALQHHLFCPRQCALIHVERIWAENGATAEGRILHERVDDGRPDRRTGVRTVRALTIRSLTLGV
FGKADAVEFHGVETAAVPYPVEYKRGRPKAHRADEVQLCAQAICLEDMFGHSVPEGALFYGQPRRRTVVVFDGALRTLTE
QTARKVRAMIADCLTPPPVYKASCNQCSLQHACQPRRLEKPPSIGRWFATQLLEEDNA
>Mature_218_residues
MHAPPDNATEDALVPISALQHHLFCPRQCALIHVERIWAENGATAEGRILHERVDDGRPDRRTGVRTVRALTIRSLTLGV
FGKADAVEFHGVETAAVPYPVEYKRGRPKAHRADEVQLCAQAICLEDMFGHSVPEGALFYGQPRRRTVVVFDGALRTLTE
QTARKVRAMIADCLTPPPVYKASCNQCSLQHACQPRRLEKPPSIGRWFATQLLEEDNA

Specific function: Unknown

COG id: COG1468

COG function: function code L; RecB family exonuclease

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 24280; Mature: 24280

Theoretical pI: Translated: 8.03; Mature: 8.03

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.7 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
5.0 %Cys+Met (Translated Protein)
3.7 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
5.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MHAPPDNATEDALVPISALQHHLFCPRQCALIHVERIWAENGATAEGRILHERVDDGRPD
CCCCCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHCCCCCC
RRTGVRTVRALTIRSLTLGVFGKADAVEFHGVETAAVPYPVEYKRGRPKAHRADEVQLCA
HHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHH
QAICLEDMFGHSVPEGALFYGQPRRRTVVVFDGALRTLTEQTARKVRAMIADCLTPPPVY
HHHHHHHHHCCCCCCCCEEECCCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCC
KASCNQCSLQHACQPRRLEKPPSIGRWFATQLLEEDNA
CCCCCHHHHHHCCCCCCCCCCCCHHHHHHHHHHHCCCC
>Mature Secondary Structure
MHAPPDNATEDALVPISALQHHLFCPRQCALIHVERIWAENGATAEGRILHERVDDGRPD
CCCCCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHCCCCCC
RRTGVRTVRALTIRSLTLGVFGKADAVEFHGVETAAVPYPVEYKRGRPKAHRADEVQLCA
HHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHH
QAICLEDMFGHSVPEGALFYGQPRRRTVVVFDGALRTLTEQTARKVRAMIADCLTPPPVY
HHHHHHHHHCCCCCCCCEEECCCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCC
KASCNQCSLQHACQPRRLEKPPSIGRWFATQLLEEDNA
CCCCCHHHHHHCCCCCCCCCCCCHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA