| Definition | Escherichia coli UTI89 chromosome, complete genome. |
|---|---|
| Accession | NC_007946 |
| Length | 5,065,741 |
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The map label for this gene is yibO [H]
Identifier: 162138341
GI number: 162138341
Start: 4046975
End: 4048519
Strand: Direct
Name: yibO [H]
Synonym: UTI89_C4157
Alternate gene names: 162138341
Gene position: 4046975-4048519 (Clockwise)
Preceding gene: 91213129
Following gene: 91213131
Centisome position: 79.89
GC content: 53.07
Gene sequence:
>1545_bases ATGTCGGTTTCTAAAAAACCTATGGTACTGGTGATTCTGGATGGCTATGGCTATCGCGAAGAACAGCAGGATAACGCCAT TTTTAGTGCTAAAACCCCGGTAATGGATGCACTGTGGGCCAATCGTCCGCATACCCTGATCGACGCTTCCGGTTTGGAAG TCGGTCTGCCTGACCGTCAGATGGGCAACTCCGAAGTAGGCCACGTTAACCTGGGTGCCGGCCGCATCGTGTATCAGGAC CTGACTCGTCTGGACGTTGAAATCAAAGATCGCGCTTTCTTTGCTAATCCGGTGTTGACTGGTGCAGTAGATAAAGCGAA AAACGCAGGCAAAGCAGTACACATTATGGGTCTGCTCTCCGCAGGTGGTGTACACAGCCACGAAGATCACATCATGGCGA TGGTAGAACTGGCAGCTGAACGCGGCGCAGAAAAAATCTACCTACACGCATTCCTTGACGGTCGCGACACTCCGCCGCGC AGTGCTGAATCCTCGCTGAAAAAATTCGAAGAGAAATTTGCCGCGCTGGGTAAAGGCCGCGTAGCGTCCATCATTGGTCG TTACTACGCGATGGACCGCGATAACCGTTGGGATCGCGTTGAAAAAGCTTATGACCTGCTGACTCTGGCGCAAGGTGAGT TCCAGGCCGATACCGCCGTTGCCGGTTTGCAGGCTGCTTATGCTCGCGACGAAAACGACGAGTTCGTGAAAGCGACCGTT ATTCGTGCAGAAGGTCAGCCAGATGCGGCAATGGAAGACGGCGATGCGCTGATTTTCATGAACTTCCGTGCTGACCGCGC GCGTGAAATCACTCGTGCTTTCGTGAACGCTGATTTCGATGGCTTCGCGCGTAAGAAAGTGGTTAACGTCGATTTCGTGA TGCTGACCGAATACGCTGCCGACATCAAAACCGCAGTGGCTTACCCACCCGCTTCCCTGGTTAACACCTTCGGCGAGTGG ATGGCGAAAAACGACAAAACTCAGCTGCGTATTTCCGAAACCGAAAAATATGCCCACGTTACTTTCTTCTTCAACGGTGG CGTAGAAGAGTCGTTCAAAGGCGAAGATCGCATTCTGATCAACTCACCGAAAGTGGCTACCTACGATCTGCAACCGGAAA TGAGCTCCGCAGAGCTGACCGAAAAACTGGTTGCGGCAATCAAGAGCGGCAAATACGACACCATTATCTGTAACTATCCG AACGGCGACATGGTAGGTCACACCGGGGTGATGGAAGCGGCGGTTAAAGCGGTTGAAGCGCTGGATCACTGCGTGGAAGA AGTCGCGAAAGCGGTTGAGTCCGTGGGTGGACAACTGCTGATCACCGCTGACCACGGTAACGCTGAACAGATGCGCGATC CGGCAACGGGTCAGGCACACACAGCACACACCAACCTGCCAGTTCCGCTGATTTACGTTGGTGATAAGAACGTGAAAGCG GTTGAAGGCGGCAAACTTTCTGACATCGCGCCGACCATGTTGTCGCTGATGGGTATGGAAATCCCGCAAGAGATGACTGG TAAGCCGCTGTTCATCGTGGAATAA
Upstream 100 bases:
>100_bases GCCGCGAGCGGTCGTATATTTTGATCTTCAGAGGCTATTTTATCGATTCAGCTGTAGTAAAATTACGCAAATTTTGACTC TTGAGTATGAGGTTGTCGCA
Downstream 100 bases:
>100_bases TCCCTCCCCATGAGGGGAAAGGCGATTAATACCATGACACGGGCCGTGAAACCGCGCAGGTTTGCAATCAGGCCCATCAT CTACGCCAGCGTTCTGAGCG
Product: phosphoglyceromutase
Products: NA
Alternate protein names: BPG-independent PGAM; Phosphoglyceromutase; iPGM [H]
Number of amino acids: Translated: 514; Mature: 513
Protein sequence:
>514_residues MSVSKKPMVLVILDGYGYREEQQDNAIFSAKTPVMDALWANRPHTLIDASGLEVGLPDRQMGNSEVGHVNLGAGRIVYQD LTRLDVEIKDRAFFANPVLTGAVDKAKNAGKAVHIMGLLSAGGVHSHEDHIMAMVELAAERGAEKIYLHAFLDGRDTPPR SAESSLKKFEEKFAALGKGRVASIIGRYYAMDRDNRWDRVEKAYDLLTLAQGEFQADTAVAGLQAAYARDENDEFVKATV IRAEGQPDAAMEDGDALIFMNFRADRAREITRAFVNADFDGFARKKVVNVDFVMLTEYAADIKTAVAYPPASLVNTFGEW MAKNDKTQLRISETEKYAHVTFFFNGGVEESFKGEDRILINSPKVATYDLQPEMSSAELTEKLVAAIKSGKYDTIICNYP NGDMVGHTGVMEAAVKAVEALDHCVEEVAKAVESVGGQLLITADHGNAEQMRDPATGQAHTAHTNLPVPLIYVGDKNVKA VEGGKLSDIAPTMLSLMGMEIPQEMTGKPLFIVE
Sequences:
>Translated_514_residues MSVSKKPMVLVILDGYGYREEQQDNAIFSAKTPVMDALWANRPHTLIDASGLEVGLPDRQMGNSEVGHVNLGAGRIVYQD LTRLDVEIKDRAFFANPVLTGAVDKAKNAGKAVHIMGLLSAGGVHSHEDHIMAMVELAAERGAEKIYLHAFLDGRDTPPR SAESSLKKFEEKFAALGKGRVASIIGRYYAMDRDNRWDRVEKAYDLLTLAQGEFQADTAVAGLQAAYARDENDEFVKATV IRAEGQPDAAMEDGDALIFMNFRADRAREITRAFVNADFDGFARKKVVNVDFVMLTEYAADIKTAVAYPPASLVNTFGEW MAKNDKTQLRISETEKYAHVTFFFNGGVEESFKGEDRILINSPKVATYDLQPEMSSAELTEKLVAAIKSGKYDTIICNYP NGDMVGHTGVMEAAVKAVEALDHCVEEVAKAVESVGGQLLITADHGNAEQMRDPATGQAHTAHTNLPVPLIYVGDKNVKA VEGGKLSDIAPTMLSLMGMEIPQEMTGKPLFIVE >Mature_513_residues SVSKKPMVLVILDGYGYREEQQDNAIFSAKTPVMDALWANRPHTLIDASGLEVGLPDRQMGNSEVGHVNLGAGRIVYQDL TRLDVEIKDRAFFANPVLTGAVDKAKNAGKAVHIMGLLSAGGVHSHEDHIMAMVELAAERGAEKIYLHAFLDGRDTPPRS AESSLKKFEEKFAALGKGRVASIIGRYYAMDRDNRWDRVEKAYDLLTLAQGEFQADTAVAGLQAAYARDENDEFVKATVI RAEGQPDAAMEDGDALIFMNFRADRAREITRAFVNADFDGFARKKVVNVDFVMLTEYAADIKTAVAYPPASLVNTFGEWM AKNDKTQLRISETEKYAHVTFFFNGGVEESFKGEDRILINSPKVATYDLQPEMSSAELTEKLVAAIKSGKYDTIICNYPN GDMVGHTGVMEAAVKAVEALDHCVEEVAKAVESVGGQLLITADHGNAEQMRDPATGQAHTAHTNLPVPLIYVGDKNVKAV EGGKLSDIAPTMLSLMGMEIPQEMTGKPLFIVE
Specific function: Catalyzes the interconversion of 2-phosphoglycerate and 3-phosphoglycerate [H]
COG id: COG0696
COG function: function code G; Phosphoglyceromutase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the BPG-independent phosphoglycerate mutase family [H]
Homologues:
Organism=Escherichia coli, GI1790041, Length=514, Percent_Identity=99.8054474708171, Blast_Score=1056, Evalue=0.0, Organism=Caenorhabditis elegans, GI32564249, Length=519, Percent_Identity=45.4720616570328, Blast_Score=441, Evalue=1e-124, Organism=Caenorhabditis elegans, GI17507741, Length=519, Percent_Identity=45.4720616570328, Blast_Score=441, Evalue=1e-124,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR017849 - InterPro: IPR017850 - InterPro: IPR011258 - InterPro: IPR006124 - InterPro: IPR005995 [H]
Pfam domain/function: PF06415 iPGM_N; PF01676 Metalloenzyme [H]
EC number: =5.4.2.1 [H]
Molecular weight: Translated: 56168; Mature: 56037
Theoretical pI: Translated: 4.92; Mature: 4.92
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 3.9 %Met (Translated Protein) 4.3 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 3.7 %Met (Mature Protein) 4.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSVSKKPMVLVILDGYGYREEQQDNAIFSAKTPVMDALWANRPHTLIDASGLEVGLPDRQ CCCCCCCEEEEEECCCCCCCCCCCCCEEECCCCHHHHHHCCCCCEEEECCCCEECCCCCC MGNSEVGHVNLGAGRIVYQDLTRLDVEIKDRAFFANPVLTGAVDKAKNAGKAVHIMGLLS CCCCCCCEEECCCCHHHHHHHHHCCEEEECCEEECCCCHHCCHHHHCCCCCEEEEEEECC AGGVHSHEDHIMAMVELAAERGAEKIYLHAFLDGRDTPPRSAESSLKKFEEKFAALGKGR CCCCCCCHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCH VASIIGRYYAMDRDNRWDRVEKAYDLLTLAQGEFQADTAVAGLQAAYARDENDEFVKATV HHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCEEEEEE IRAEGQPDAAMEDGDALIFMNFRADRAREITRAFVNADFDGFARKKVVNVDFVMLTEYAA EEECCCCCCCCCCCCEEEEEECCCHHHHHHHHHHHCCCCCCHHHHEEEEEEEEEEHHHHH DIKTAVAYPPASLVNTFGEWMAKNDKTQLRISETEKYAHVTFFFNGGVEESFKGEDRILI HHHHHHCCCCHHHHHHHHHHHHCCCCCEEEEECCCCEEEEEEEEECCCCCCCCCCCEEEE NSPKVATYDLQPEMSSAELTEKLVAAIKSGKYDTIICNYPNGDMVGHTGVMEAAVKAVEA ECCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCHHHHHHHHHHHHH LDHCVEEVAKAVESVGGQLLITADHGNAEQMRDPATGQAHTAHTNLPVPLIYVGDKNVKA HHHHHHHHHHHHHHCCCEEEEEECCCCHHHHCCCCCCCCEEEECCCCEEEEEECCCCEEE VEGGKLSDIAPTMLSLMGMEIPQEMTGKPLFIVE ECCCCCCHHHHHHHHHHCCCCCHHHCCCCEEEEC >Mature Secondary Structure SVSKKPMVLVILDGYGYREEQQDNAIFSAKTPVMDALWANRPHTLIDASGLEVGLPDRQ CCCCCCEEEEEECCCCCCCCCCCCCEEECCCCHHHHHHCCCCCEEEECCCCEECCCCCC MGNSEVGHVNLGAGRIVYQDLTRLDVEIKDRAFFANPVLTGAVDKAKNAGKAVHIMGLLS CCCCCCCEEECCCCHHHHHHHHHCCEEEECCEEECCCCHHCCHHHHCCCCCEEEEEEECC AGGVHSHEDHIMAMVELAAERGAEKIYLHAFLDGRDTPPRSAESSLKKFEEKFAALGKGR CCCCCCCHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCH VASIIGRYYAMDRDNRWDRVEKAYDLLTLAQGEFQADTAVAGLQAAYARDENDEFVKATV HHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCEEEEEE IRAEGQPDAAMEDGDALIFMNFRADRAREITRAFVNADFDGFARKKVVNVDFVMLTEYAA EEECCCCCCCCCCCCEEEEEECCCHHHHHHHHHHHCCCCCCHHHHEEEEEEEEEEHHHHH DIKTAVAYPPASLVNTFGEWMAKNDKTQLRISETEKYAHVTFFFNGGVEESFKGEDRILI HHHHHHCCCCHHHHHHHHHHHHCCCCCEEEEECCCCEEEEEEEEECCCCCCCCCCCEEEE NSPKVATYDLQPEMSSAELTEKLVAAIKSGKYDTIICNYPNGDMVGHTGVMEAAVKAVEA ECCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCHHHHHHHHHHHHH LDHCVEEVAKAVESVGGQLLITADHGNAEQMRDPATGQAHTAHTNLPVPLIYVGDKNVKA HHHHHHHHHHHHHHCCCEEEEEECCCCHHHHCCCCCCCCEEEECCCCEEEEEECCCCEEE VEGGKLSDIAPTMLSLMGMEIPQEMTGKPLFIVE ECCCCCCHHHHHHHHHHCCCCCHHHCCCCEEEEC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA