| Definition | Shigella boydii Sb227, complete genome. |
|---|---|
| Accession | NC_007613 |
| Length | 4,519,823 |
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The map label for this gene is yaeG [H]
Identifier: 161984988
GI number: 161984988
Start: 168492
End: 169637
Strand: Direct
Name: yaeG [H]
Synonym: SBO_0151
Alternate gene names: 161984988
Gene position: 168492-169637 (Clockwise)
Preceding gene: 82542761
Following gene: 82542768
Centisome position: 3.73
GC content: 52.71
Gene sequence:
>1146_bases ATGGCTGGCTGGCATCTTGATACCAAAATGGCGCAGGATATCGTGGCACGTACCATGCGCATCATCGATACCAATATCAA CGTAATGGATGCCCGTGGGCGAATTATCGGCAGCGGCGATCGTGAGCGTATTGGTGAATTGCACGAAGGTGCATTGCAGG GACGAGTCGTCGATATCGATGACGCGGTGGCACGTCATCTGCACGGTGTGCGGCAAGGGATTAATCTACCGTTACGGCTG GAAGGTGAAATTGTCGGCGTAATTGGCCTGACAGGTGAACCAGAGAATCTGCGTAAATATGGCGAACTGGTCTGCATGAC GGCTGAAATGATGCTGGAACAGTCGCGGTTGATGCACTTGTTGGCGCAGGATAGCCGTTTGCGGGAGGAACTGGTGATGA ACCTGATTCAGGCAGAGGAGAATACTCCCGCACTTACTGAATGGGCGCAACGGCTGGGGATCGATCTCAATCAACCGCGA GTGGTGGCTATTGTTGAGGTCGACAGCGGTCAGCTTGGTGTGGACAGCGCAATGGCGGAGTTACAACAACTGCAAAACGC GCTGACTACGCCCGAGCGTAATAATCTGGTGGCGATTGTCTCGCTAACCGAAATGGTGGTGTTGAAACCGGCGTTGAACT CTTTTGGGCGCTGGGATGCAAAAAATCATCGTAAGCGAGTTGAACAACTGATTACCCGCATGAAAGAGTACGGCCGGCTG CGTTTTCGCGTTTCACTGGGCAACTATTTTACCGGTCCTGGCAGTATTGCCCGATCCTATCGTACGGCGAAAACGACGAT GGTGGTGGGTAAACAGCGGATGCCAAAAAGTCGCTGCTATTTTTATCAGGATCTGATGTTACCTGTGTTACTCGACAGTT TGCGTGGCGACTGGCAGGCCAACGAACTGGCGCGACCGCTGGCGCGGCTGAAAGCGATGGACAATAACGGCTTGCTGCGA CGAACGCTGGCGGCGTGGTTTCGTCACAATGTGCAACCGCTGGCAACGTCAAAGGCGTTGTTTATTTATCGTAATACCCT GGAGTATCGGCTTAATCGTATATCGGAACTGACCGGGCTTGATTTGGGCAATTTTGATGACAGGTTGCTGCTGTATGTGG CGTTACAACTGGATGAAGAGCGGTAG
Upstream 100 bases:
>100_bases CTTCACCACAACTCCATACATCTTCATCATCCTTTAGGCATTTGCACAATGCCGTACGTTACGTACTTCCTTATGCTAAG CCGTGCATAACGGAGGACTT
Downstream 100 bases:
>100_bases GTTATGCGTTAAGGTTGAGGCGGCGCTGTCTCATTTCCCTCAGCCCGAAGGGGAGAGGGGAATGCCCGAATTAACCGTCA ATTCGGGATTATTTACGCGT
Product: carbohydrate diacid transcriptional activator CdaR
Products: NA
Alternate protein names: Sugar diacid regulator [H]
Number of amino acids: Translated: 381; Mature: 380
Protein sequence:
>381_residues MAGWHLDTKMAQDIVARTMRIIDTNINVMDARGRIIGSGDRERIGELHEGALQGRVVDIDDAVARHLHGVRQGINLPLRL EGEIVGVIGLTGEPENLRKYGELVCMTAEMMLEQSRLMHLLAQDSRLREELVMNLIQAEENTPALTEWAQRLGIDLNQPR VVAIVEVDSGQLGVDSAMAELQQLQNALTTPERNNLVAIVSLTEMVVLKPALNSFGRWDAKNHRKRVEQLITRMKEYGRL RFRVSLGNYFTGPGSIARSYRTAKTTMVVGKQRMPKSRCYFYQDLMLPVLLDSLRGDWQANELARPLARLKAMDNNGLLR RTLAAWFRHNVQPLATSKALFIYRNTLEYRLNRISELTGLDLGNFDDRLLLYVALQLDEER
Sequences:
>Translated_381_residues MAGWHLDTKMAQDIVARTMRIIDTNINVMDARGRIIGSGDRERIGELHEGALQGRVVDIDDAVARHLHGVRQGINLPLRL EGEIVGVIGLTGEPENLRKYGELVCMTAEMMLEQSRLMHLLAQDSRLREELVMNLIQAEENTPALTEWAQRLGIDLNQPR VVAIVEVDSGQLGVDSAMAELQQLQNALTTPERNNLVAIVSLTEMVVLKPALNSFGRWDAKNHRKRVEQLITRMKEYGRL RFRVSLGNYFTGPGSIARSYRTAKTTMVVGKQRMPKSRCYFYQDLMLPVLLDSLRGDWQANELARPLARLKAMDNNGLLR RTLAAWFRHNVQPLATSKALFIYRNTLEYRLNRISELTGLDLGNFDDRLLLYVALQLDEER >Mature_380_residues AGWHLDTKMAQDIVARTMRIIDTNINVMDARGRIIGSGDRERIGELHEGALQGRVVDIDDAVARHLHGVRQGINLPLRLE GEIVGVIGLTGEPENLRKYGELVCMTAEMMLEQSRLMHLLAQDSRLREELVMNLIQAEENTPALTEWAQRLGIDLNQPRV VAIVEVDSGQLGVDSAMAELQQLQNALTTPERNNLVAIVSLTEMVVLKPALNSFGRWDAKNHRKRVEQLITRMKEYGRLR FRVSLGNYFTGPGSIARSYRTAKTTMVVGKQRMPKSRCYFYQDLMLPVLLDSLRGDWQANELARPLARLKAMDNNGLLRR TLAAWFRHNVQPLATSKALFIYRNTLEYRLNRISELTGLDLGNFDDRLLLYVALQLDEER
Specific function: Seems to regulate the expression of the operons for the enzymes involved in D-galactarate, D-glucarate and D-glycerate utilization [H]
COG id: COG3835
COG function: function code KT; Sugar diacid utilization regulator
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the CdaR family [H]
Homologues:
Organism=Escherichia coli, GI87081694, Length=385, Percent_Identity=97.4025974025974, Blast_Score=759, Evalue=0.0,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR008599 [H]
Pfam domain/function: PF05651 Diacid_rec [H]
EC number: NA
Molecular weight: Translated: 43297; Mature: 43166
Theoretical pI: Translated: 8.98; Mature: 8.98
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 4.2 %Met (Translated Protein) 4.7 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 3.9 %Met (Mature Protein) 4.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAGWHLDTKMAQDIVARTMRIIDTNINVMDARGRIIGSGDRERIGELHEGALQGRVVDID CCCCCCHHHHHHHHHHHHHHHHHCCCEEEECCCCEECCCCHHHHHHHHHHHHCCCEEEHH DAVARHLHGVRQGINLPLRLEGEIVGVIGLTGEPENLRKYGELVCMTAEMMLEQSRLMHL HHHHHHHHHHHHCCCCCEEECCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH LAQDSRLREELVMNLIQAEENTPALTEWAQRLGIDLNQPRVVAIVEVDSGQLGVDSAMAE HHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCEEEEEEEECCCCCCHHHHHHH LQQLQNALTTPERNNLVAIVSLTEMVVLKPALNSFGRWDAKNHRKRVEQLITRMKEYGRL HHHHHHHHCCCCCCCEEEEEEHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCE RFRVSLGNYFTGPGSIARSYRTAKTTMVVGKQRMPKSRCYFYQDLMLPVLLDSLRGDWQA EEEEEECCEECCCHHHHHHHHHHHHHEEECHHCCCHHHHHHHHHHHHHHHHHHHCCCCCH NELARPLARLKAMDNNGLLRRTLAAWFRHNVQPLATSKALFIYRNTLEYRLNRISELTGL HHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCCCEEEEEHHHHHHHHHHHHHHHCC DLGNFDDRLLLYVALQLDEER CCCCCCCCEEEEEEEEECCCC >Mature Secondary Structure AGWHLDTKMAQDIVARTMRIIDTNINVMDARGRIIGSGDRERIGELHEGALQGRVVDID CCCCCHHHHHHHHHHHHHHHHHCCCEEEECCCCEECCCCHHHHHHHHHHHHCCCEEEHH DAVARHLHGVRQGINLPLRLEGEIVGVIGLTGEPENLRKYGELVCMTAEMMLEQSRLMHL HHHHHHHHHHHHCCCCCEEECCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH LAQDSRLREELVMNLIQAEENTPALTEWAQRLGIDLNQPRVVAIVEVDSGQLGVDSAMAE HHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCEEEEEEEECCCCCCHHHHHHH LQQLQNALTTPERNNLVAIVSLTEMVVLKPALNSFGRWDAKNHRKRVEQLITRMKEYGRL HHHHHHHHCCCCCCCEEEEEEHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCE RFRVSLGNYFTGPGSIARSYRTAKTTMVVGKQRMPKSRCYFYQDLMLPVLLDSLRGDWQA EEEEEECCEECCCHHHHHHHHHHHHHEEECHHCCCHHHHHHHHHHHHHHHHHHHCCCCCH NELARPLARLKAMDNNGLLRRTLAAWFRHNVQPLATSKALFIYRNTLEYRLNRISELTGL HHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCCCEEEEEHHHHHHHHHHHHHHHCC DLGNFDDRLLLYVALQLDEER CCCCCCCCEEEEEEEEECCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 8202364; 9278503; 10762278 [H]