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The map label for this gene is ydgJ [H]

Identifier: 161984943

GI number: 161984943

Start: 1486475

End: 1487515

Strand: Direct

Name: ydgJ [H]

Synonym: SBO_1510

Alternate gene names: 161984943

Gene position: 1486475-1487515 (Clockwise)

Preceding gene: 82543996

Following gene: 82544012

Centisome position: 32.89

GC content: 53.31

Gene sequence:

>1041_bases
ATGAGCGACAACATCCGTGTTGGGTTGATTGGGTATGGTTATGCGAGCAAAACCTTCCATGCGCCCCTGATTGCGGGCAC
GCCCGGGCTGGAACTGGCGGTAATCTCCAGCAGTGATGAAACAAAAGTAAAAGCCGACTGGCCAACGGTTACGGTTGTCT
CTGAGCCGAAGCATCTGTTTAACGATCCCAACATAGACCTGATTGTCATTCCTACACCCAACGATACCCATTTCCCGTTA
GCCAAAGCGGCGCTTGAGGCGGGTAAACATGTGGTCGTTGATAAACCCTTTACCGTGACACTGTCACAAGCGCGAGAGCT
GGATGCGCTGGCAAAAAGCCTGGGGCGTGTGCTGTCTGTATTCCATAACCGTCGTTGGGATAGCGATTTCTTGACGCTAA
AAGGTTTGCTCGCGGAAGGCGTGCTGGGTGAAGTTGCTTACTTTGAGTCTCATTTTGACCGCTTCCGTCCGCAGGTGCGC
GATCGTTGGCGTGAACAGGGCGGCCCAGGCAGCGGTATCTGGTACGATTTAGCACCGCATCTTCTTGATCAGGCCATTAC
GCTATTTGGTTTACCGGTCAGCATGACGGTAGATTTGGCACAGTTACGGCCCGGAGCGCAGTCGACCGATTATTTCCACG
CCATCTTGTCCTATCCACAGCGGCGAGTCATTTTACACGGTACCATGCTGGCAGCCGCTGAGTCAGCACGGTATATCGTG
CATGGATCCCGAGGCAGTTATGTGAAATATGGCCTCGATCCACAGGAAGAACGTCTGAAAAATGGCGAGCGTCTGCCGCA
GGAAGACTGGGGCTACGATATGCGTGATGGCGTACTTACCCGAGTGGAAGGTGAGGAACGTGTCGAAGAAACGCTGTTGA
CGGTACCTGGGAATTATCCGGCTTACTATGCGGCTATTCGTGATGCGTTAAATGGCGATGGTGAAAATCCGGTTCCGGCA
AGCCAGGCAATCCAGGTAATGGAGTTGATTGAGCTGGGCATCGAATCCGCCAAACATCGCGCGACTTTGTGCCTTGCATG
A

Upstream 100 bases:

>100_bases
CGTTGGAAAATTCGCTATTTTTTTGACTTAATATTAAACTGTTGAGCGTGGGTAAAGGATAGTGTCAAATAGCAATCATA
CTTCAATGAGAGGCAATGAC

Downstream 100 bases:

>100_bases
AAAATGGATGGTGCAATTTGCACCATCCATTTTGTTACTTCGCGGCGACTTTTTCTCGCAGTGCGCGTTTTTCCTCAGCG
CTGAGGAAAGCCATTTCCAG

Product: oxidoreductase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 346; Mature: 345

Protein sequence:

>346_residues
MSDNIRVGLIGYGYASKTFHAPLIAGTPGLELAVISSSDETKVKADWPTVTVVSEPKHLFNDPNIDLIVIPTPNDTHFPL
AKAALEAGKHVVVDKPFTVTLSQARELDALAKSLGRVLSVFHNRRWDSDFLTLKGLLAEGVLGEVAYFESHFDRFRPQVR
DRWREQGGPGSGIWYDLAPHLLDQAITLFGLPVSMTVDLAQLRPGAQSTDYFHAILSYPQRRVILHGTMLAAAESARYIV
HGSRGSYVKYGLDPQEERLKNGERLPQEDWGYDMRDGVLTRVEGEERVEETLLTVPGNYPAYYAAIRDALNGDGENPVPA
SQAIQVMELIELGIESAKHRATLCLA

Sequences:

>Translated_346_residues
MSDNIRVGLIGYGYASKTFHAPLIAGTPGLELAVISSSDETKVKADWPTVTVVSEPKHLFNDPNIDLIVIPTPNDTHFPL
AKAALEAGKHVVVDKPFTVTLSQARELDALAKSLGRVLSVFHNRRWDSDFLTLKGLLAEGVLGEVAYFESHFDRFRPQVR
DRWREQGGPGSGIWYDLAPHLLDQAITLFGLPVSMTVDLAQLRPGAQSTDYFHAILSYPQRRVILHGTMLAAAESARYIV
HGSRGSYVKYGLDPQEERLKNGERLPQEDWGYDMRDGVLTRVEGEERVEETLLTVPGNYPAYYAAIRDALNGDGENPVPA
SQAIQVMELIELGIESAKHRATLCLA
>Mature_345_residues
SDNIRVGLIGYGYASKTFHAPLIAGTPGLELAVISSSDETKVKADWPTVTVVSEPKHLFNDPNIDLIVIPTPNDTHFPLA
KAALEAGKHVVVDKPFTVTLSQARELDALAKSLGRVLSVFHNRRWDSDFLTLKGLLAEGVLGEVAYFESHFDRFRPQVRD
RWREQGGPGSGIWYDLAPHLLDQAITLFGLPVSMTVDLAQLRPGAQSTDYFHAILSYPQRRVILHGTMLAAAESARYIVH
GSRGSYVKYGLDPQEERLKNGERLPQEDWGYDMRDGVLTRVEGEERVEETLLTVPGNYPAYYAAIRDALNGDGENPVPAS
QAIQVMELIELGIESAKHRATLCLA

Specific function: Unknown

COG id: COG0673

COG function: function code R; Predicted dehydrogenases and related proteins

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the gfo/idh/mocA family [H]

Homologues:

Organism=Escherichia coli, GI87081947, Length=346, Percent_Identity=99.7109826589595, Blast_Score=707, Evalue=0.0,
Organism=Escherichia coli, GI1789848, Length=346, Percent_Identity=36.1271676300578, Blast_Score=199, Evalue=2e-52,
Organism=Escherichia coli, GI1787574, Length=211, Percent_Identity=27.9620853080569, Blast_Score=84, Evalue=1e-17,
Organism=Saccharomyces cerevisiae, GI6323975, Length=259, Percent_Identity=25.4826254826255, Blast_Score=63, Evalue=6e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR016040
- InterPro:   IPR000683
- InterPro:   IPR004104 [H]

Pfam domain/function: PF01408 GFO_IDH_MocA; PF02894 GFO_IDH_MocA_C [H]

EC number: 1.-.-.- [C]

Molecular weight: Translated: 38243; Mature: 38112

Theoretical pI: Translated: 5.58; Mature: 5.58

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
1.7 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
1.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSDNIRVGLIGYGYASKTFHAPLIAGTPGLELAVISSSDETKVKADWPTVTVVSEPKHLF
CCCCEEEEEEEECCCCCCCCCCEEECCCCCEEEEEECCCCCEEEECCCEEEEEECCHHHC
NDPNIDLIVIPTPNDTHFPLAKAALEAGKHVVVDKPFTVTLSQARELDALAKSLGRVLSV
CCCCEEEEEEECCCCCCCHHHHHHHHCCCEEEECCCCEEEHHHHHHHHHHHHHHHHHHHH
FHNRRWDSDFLTLKGLLAEGVLGEVAYFESHFDRFRPQVRDRWREQGGPGSGIWYDLAPH
HHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHCCCCCCCCHHHHHHH
LLDQAITLFGLPVSMTVDLAQLRPGAQSTDYFHAILSYPQRRVILHGTMLAAAESARYIV
HHHHHHHHHCCCHHHEEEHHHCCCCCCCHHHHHHHHHCCCCEEEEEHHHHHHHCCCEEEE
HGSRGSYVKYGLDPQEERLKNGERLPQEDWGYDMRDGVLTRVEGEERVEETLLTVPGNYP
ECCCCCEEEECCCCHHHHHCCCCCCCHHHCCCCCCCCEEEECCCHHHHHHHEEECCCCCC
AYYAAIRDALNGDGENPVPASQAIQVMELIELGIESAKHRATLCLA
HHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCEEEECC
>Mature Secondary Structure 
SDNIRVGLIGYGYASKTFHAPLIAGTPGLELAVISSSDETKVKADWPTVTVVSEPKHLF
CCCEEEEEEEECCCCCCCCCCEEECCCCCEEEEEECCCCCEEEECCCEEEEEECCHHHC
NDPNIDLIVIPTPNDTHFPLAKAALEAGKHVVVDKPFTVTLSQARELDALAKSLGRVLSV
CCCCEEEEEEECCCCCCCHHHHHHHHCCCEEEECCCCEEEHHHHHHHHHHHHHHHHHHHH
FHNRRWDSDFLTLKGLLAEGVLGEVAYFESHFDRFRPQVRDRWREQGGPGSGIWYDLAPH
HHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHCCCCCCCCHHHHHHH
LLDQAITLFGLPVSMTVDLAQLRPGAQSTDYFHAILSYPQRRVILHGTMLAAAESARYIV
HHHHHHHHHCCCHHHEEEHHHCCCCCCCHHHHHHHHHCCCCEEEEEHHHHHHHCCCEEEE
HGSRGSYVKYGLDPQEERLKNGERLPQEDWGYDMRDGVLTRVEGEERVEETLLTVPGNYP
ECCCCCEEEECCCCHHHHHCCCCCCCHHHCCCCCCCCEEEECCCHHHHHHHEEECCCCCC
AYYAAIRDALNGDGENPVPASQAIQVMELIELGIESAKHRATLCLA
HHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503 [H]