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The map label for this gene is exbD [H]

Identifier: 161870575

GI number: 161870575

Start: 1675189

End: 1675623

Strand: Reverse

Name: exbD [H]

Synonym: NMCC_1641

Alternate gene names: 161870575

Gene position: 1675623-1675189 (Counterclockwise)

Preceding gene: 161870576

Following gene: 161870572

Centisome position: 77.81

GC content: 51.49

Gene sequence:

>435_bases
ATGGCATTTGGTTCGATGAATTCCGGCGACGATTCTCCGATGTCCGACATCAACGTTACGCCGTTGGTGGACGTGATGCT
GGTGTTGCTGATTGTGTTTATGATTACTATGCCGGTGCTGACGCATTCCATCCCTTTGGAACTGCCGACCGCGTCCGAGC
AGACAAACAAGCAGGACAAACAGCCTAAAGACCCCCTGCGCCTGACGATTGATGCGAACGGCGGCTATTATGTCGGCGGG
GATTCTGCAAGCAAAGTGGAAATCGAGGAAGTGGAAAGCCGTCTGAAAGCCGCCAAGGAGCAGAATGAAAACGTGATTGT
GGCGATTGCGGCAGACAAGGCGGTGGAATACGATTATGTAAACAAAGCTTTAGAAGCCGCCCGTCAGGCAGGAATCACCA
AAATCGGTTTTGTAACCGAAACCAAGGCGCAATAA

Upstream 100 bases:

>100_bases
ACAACTTCCTCAATCGCGGCACAAAAATACTGACCCAGGATTTGGATGCGATGGCGCACGATTTGCACGTCCGCCTGCTT
AATCAAAAGGATAGCTGATT

Downstream 100 bases:

>100_bases
AGTTCGACGCTTGAACGAATGCCGTCTGAAAGTCTTTCAGACGGCATTTCTTATGTTTAATCAGCTATATATAGTTGATT
AAAACAAAAATGAGACGACA

Product: biopolymer transport protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 144; Mature: 143

Protein sequence:

>144_residues
MAFGSMNSGDDSPMSDINVTPLVDVMLVLLIVFMITMPVLTHSIPLELPTASEQTNKQDKQPKDPLRLTIDANGGYYVGG
DSASKVEIEEVESRLKAAKEQNENVIVAIAADKAVEYDYVNKALEAARQAGITKIGFVTETKAQ

Sequences:

>Translated_144_residues
MAFGSMNSGDDSPMSDINVTPLVDVMLVLLIVFMITMPVLTHSIPLELPTASEQTNKQDKQPKDPLRLTIDANGGYYVGG
DSASKVEIEEVESRLKAAKEQNENVIVAIAADKAVEYDYVNKALEAARQAGITKIGFVTETKAQ
>Mature_143_residues
AFGSMNSGDDSPMSDINVTPLVDVMLVLLIVFMITMPVLTHSIPLELPTASEQTNKQDKQPKDPLRLTIDANGGYYVGGD
SASKVEIEEVESRLKAAKEQNENVIVAIAADKAVEYDYVNKALEAARQAGITKIGFVTETKAQ

Specific function: Involved in the tonB-dependent energy-dependent transport of various receptor-bound substrates [H]

COG id: COG0848

COG function: function code U; Biopolymer transport protein

Gene ontology:

Cell location: Cell inner membrane; Single-pass type II membrane protein (Probable) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the exbD/tolR family [H]

Homologues:

Organism=Escherichia coli, GI1789380, Length=138, Percent_Identity=35.5072463768116, Blast_Score=89, Evalue=8e-20,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003400 [H]

Pfam domain/function: PF02472 ExbD [H]

EC number: NA

Molecular weight: Translated: 15586; Mature: 15455

Theoretical pI: Translated: 4.32; Mature: 4.32

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
4.2 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.5 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAFGSMNSGDDSPMSDINVTPLVDVMLVLLIVFMITMPVLTHSIPLELPTASEQTNKQDK
CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCC
QPKDPLRLTIDANGGYYVGGDSASKVEIEEVESRLKAAKEQNENVIVAIAADKAVEYDYV
CCCCCEEEEEECCCCEEECCCCCCEEEHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHH
NKALEAARQAGITKIGFVTETKAQ
HHHHHHHHHCCCEEEEEEECCCCC
>Mature Secondary Structure 
AFGSMNSGDDSPMSDINVTPLVDVMLVLLIVFMITMPVLTHSIPLELPTASEQTNKQDK
CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCC
QPKDPLRLTIDANGGYYVGGDSASKVEIEEVESRLKAAKEQNENVIVAIAADKAVEYDYV
CCCCCEEEEEECCCCEEECCCCCCEEEHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHH
NKALEAARQAGITKIGFVTETKAQ
HHHHHHHHHCCCEEEEEEECCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9140974 [H]