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The map label for this gene is yqfA [C]

Identifier: 161870490

GI number: 161870490

Start: 1577916

End: 1578473

Strand: Direct

Name: yqfA [C]

Synonym: NMCC_1546

Alternate gene names: 161870490

Gene position: 1577916-1578473 (Clockwise)

Preceding gene: 161870487

Following gene: 161870492

Centisome position: 73.28

GC content: 51.08

Gene sequence:

>558_bases
GTGCTGATGCTGCTGAAAACCATAGGACACGGGGACGGCTACCGTATCTTCAGCGTATCGGTTTACGGCATCAGCCTTCT
TCTGCTCTATTTGAGTTCCTCGCTGTACCACGGAATTGCAGCCGGAAAACTGAAAAGCATTTTGAAAAAAACCGACCACT
GCATGATTTATGTCCTGATTGCCGGAAGCTACACACCGTTTGCACTGGTTTCTTTGAGAAACGGGCCGGGCTGGACGGTA
TTTTCACTGTCCTGGCTGCTGGCGGCTGCAGGAATCGCACAAGAACTCACCATCGGACGGAAAAGCGAAAAACGTCTGCT
GTCTATTGTGATTTATGTCGTCATGGGTTGGATGGTCTTGGCGGTAATGAAATCCCTGACAGCCTCACTCCCGTCGGCAG
GACTGGCTTGGCTGGCGGCAGGCGGTATGCTGTACAGCGTCGGCATTTACTGGTTTGTAAACGATGAAAAAATCCGACAC
GGGCACGGAATCTGGCATCTGTTCGTATTGGGCGGCAGCATCACCCAATTTGTCAGTGTGTACGGTTATGTAATCTGA

Upstream 100 bases:

>100_bases
GACTGCCTCTACTTTCCCGAAAGATTGTGCGATGTATACAGGCGAACGCTTCAATACTTACAGCCATTTGAGCGGTTTGA
TTCTGGCGGCGGCAGGTTTG

Downstream 100 bases:

>100_bases
ATGCCGTCTGAAAAACAAAACCTCCCGATCCTGAAGATTGGGAGGTTTTCTGTTTGCCGGACATCAGCCCTTGTCGTGGA
ACTCGTGGAATTCATACGGA

Product: hemolysin, putative

Products: NA

Alternate protein names: Hemolysin III; Hly-III [H]

Number of amino acids: Translated: 185; Mature: 185

Protein sequence:

>185_residues
MLMLLKTIGHGDGYRIFSVSVYGISLLLLYLSSSLYHGIAAGKLKSILKKTDHCMIYVLIAGSYTPFALVSLRNGPGWTV
FSLSWLLAAAGIAQELTIGRKSEKRLLSIVIYVVMGWMVLAVMKSLTASLPSAGLAWLAAGGMLYSVGIYWFVNDEKIRH
GHGIWHLFVLGGSITQFVSVYGYVI

Sequences:

>Translated_185_residues
MLMLLKTIGHGDGYRIFSVSVYGISLLLLYLSSSLYHGIAAGKLKSILKKTDHCMIYVLIAGSYTPFALVSLRNGPGWTV
FSLSWLLAAAGIAQELTIGRKSEKRLLSIVIYVVMGWMVLAVMKSLTASLPSAGLAWLAAGGMLYSVGIYWFVNDEKIRH
GHGIWHLFVLGGSITQFVSVYGYVI
>Mature_185_residues
MLMLLKTIGHGDGYRIFSVSVYGISLLLLYLSSSLYHGIAAGKLKSILKKTDHCMIYVLIAGSYTPFALVSLRNGPGWTV
FSLSWLLAAAGIAQELTIGRKSEKRLLSIVIYVVMGWMVLAVMKSLTASLPSAGLAWLAAGGMLYSVGIYWFVNDEKIRH
GHGIWHLFVLGGSITQFVSVYGYVI

Specific function: Unknown

COG id: COG1272

COG function: function code R; Predicted membrane protein, hemolysin III homolog

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0073 (Hly-III) family [H]

Homologues:

Organism=Homo sapiens, GI154759275, Length=183, Percent_Identity=30.0546448087432, Blast_Score=76, Evalue=2e-14,
Organism=Homo sapiens, GI52630445, Length=187, Percent_Identity=29.9465240641711, Blast_Score=71, Evalue=4e-13,
Organism=Homo sapiens, GI154759277, Length=205, Percent_Identity=27.8048780487805, Blast_Score=70, Evalue=1e-12,
Organism=Escherichia coli, GI1789266, Length=185, Percent_Identity=41.0810810810811, Blast_Score=130, Evalue=4e-32,
Organism=Caenorhabditis elegans, GI71996356, Length=188, Percent_Identity=29.7872340425532, Blast_Score=87, Evalue=6e-18,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004254
- InterPro:   IPR005744 [H]

Pfam domain/function: PF03006 HlyIII [H]

EC number: NA

Molecular weight: Translated: 20221; Mature: 20221

Theoretical pI: Translated: 9.99; Mature: 9.99

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
3.8 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
3.8 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLMLLKTIGHGDGYRIFSVSVYGISLLLLYLSSSLYHGIAAGKLKSILKKTDHCMIYVLI
CEEEEEECCCCCCEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEE
AGSYTPFALVSLRNGPGWTVFSLSWLLAAAGIAQELTIGRKSEKRLLSIVIYVVMGWMVL
ECCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH
AVMKSLTASLPSAGLAWLAAGGMLYSVGIYWFVNDEKIRHGHGIWHLFVLGGSITQFVSV
HHHHHHHHCCCCCCHHHHHHCCCEEEEEEEEEECCCEEECCCCEEEEEEECCCHHHHHHH
YGYVI
HHHCC
>Mature Secondary Structure
MLMLLKTIGHGDGYRIFSVSVYGISLLLLYLSSSLYHGIAAGKLKSILKKTDHCMIYVLI
CEEEEEECCCCCCEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEE
AGSYTPFALVSLRNGPGWTVFSLSWLLAAAGIAQELTIGRKSEKRLLSIVIYVVMGWMVL
ECCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH
AVMKSLTASLPSAGLAWLAAGGMLYSVGIYWFVNDEKIRHGHGIWHLFVLGGSITQFVSV
HHHHHHHHCCCCCCHHHHHHCCCEEEEEEEEEECCCEEECCCCEEEEEEECCCHHHHHHH
YGYVI
HHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7495855 [H]