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The map label for this gene is 161870371

Identifier: 161870371

GI number: 161870371

Start: 1439844

End: 1440428

Strand: Reverse

Name: 161870371

Synonym: NMCC_1415

Alternate gene names: NA

Gene position: 1440428-1439844 (Counterclockwise)

Preceding gene: 161870372

Following gene: 161870370

Centisome position: 66.89

GC content: 61.03

Gene sequence:

>585_bases
GTGCGGACGGCGGTTGCCGTACTCGACGTACTCGGCGCGGCAGGGGACGCGGGTTTCGACGCGCCCGCCCGCCGCCGAGC
ATCGGCGAAATCCGGCCACCGCTACACAGGCACGGTGTCCAAAGTCTATGACGGCGACACCCTTCACGTTATCGACGGCG
ACGGCGCGAAACACAAAATCCGGATGGCGTATATCGACGCGCCGGAGATGAAACAGGCTTACGGCACGCGTTCGCGCGAC
AACCTGCGCGCGGCGGCGGAAGGCAGGAAAGTCAGCGTCCGCGTGTTCGACACCGACCGCTACCAGCGCGAAGTGGCGCA
GGTTTCTGTCGGCAAAACCGATTTGAACCTGATGCAGGTGCAGGACGGGGCGGCGTGGCATTATAAAAGTTATGCTAAAG
AACAGCAGGATAAGGCGGATTTTGCCGATTATGCCGACGCTCAAATTCAGGCGGAAAGGGAACGCAAAGGATTGTGGAAA
GCTAAAAATCCGCAAGCGCCGTGGGCGTACCGCCGGGCAGGCAGGAGCGGCGGGGGCAATAAGGATTGGATGGATGCCGT
GGGCGAATGGTTGGGCATTTGGTAA

Upstream 100 bases:

>100_bases
GCATTTGAAAAATATGCAGATTAAAAAAATCATGAAATGGCTTCCCGTCGCCTTGTCGCTTTTGGGTGCGTTGGGTTATA
CGGGGTACGGCAGCGAGGCG

Downstream 100 bases:

>100_bases
AGACACCGCACGGCTTTGAACGGCAAATGCCGTCTGAAAACCGCGCGCCCTGCATTTTTGCGGAGACGCGCAACCGCCGT
CTGCCGCGATAAAAAAGTTC

Product: thermonuclease family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 194; Mature: 194

Protein sequence:

>194_residues
MRTAVAVLDVLGAAGDAGFDAPARRRASAKSGHRYTGTVSKVYDGDTLHVIDGDGAKHKIRMAYIDAPEMKQAYGTRSRD
NLRAAAEGRKVSVRVFDTDRYQREVAQVSVGKTDLNLMQVQDGAAWHYKSYAKEQQDKADFADYADAQIQAERERKGLWK
AKNPQAPWAYRRAGRSGGGNKDWMDAVGEWLGIW

Sequences:

>Translated_194_residues
MRTAVAVLDVLGAAGDAGFDAPARRRASAKSGHRYTGTVSKVYDGDTLHVIDGDGAKHKIRMAYIDAPEMKQAYGTRSRD
NLRAAAEGRKVSVRVFDTDRYQREVAQVSVGKTDLNLMQVQDGAAWHYKSYAKEQQDKADFADYADAQIQAERERKGLWK
AKNPQAPWAYRRAGRSGGGNKDWMDAVGEWLGIW
>Mature_194_residues
MRTAVAVLDVLGAAGDAGFDAPARRRASAKSGHRYTGTVSKVYDGDTLHVIDGDGAKHKIRMAYIDAPEMKQAYGTRSRD
NLRAAAEGRKVSVRVFDTDRYQREVAQVSVGKTDLNLMQVQDGAAWHYKSYAKEQQDKADFADYADAQIQAERERKGLWK
AKNPQAPWAYRRAGRSGGGNKDWMDAVGEWLGIW

Specific function: Unknown

COG id: COG1525

COG function: function code L; Micrococcal nuclease (thermonuclease) homologs

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the thermonuclease family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR016071
- InterPro:   IPR006021
- InterPro:   IPR002071 [H]

Pfam domain/function: PF00565 SNase [H]

EC number: NA

Molecular weight: Translated: 21552; Mature: 21552

Theoretical pI: Translated: 9.89; Mature: 9.89

Prosite motif: PS01123 TNASE_1 ; PS50830 TNASE_3

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRTAVAVLDVLGAAGDAGFDAPARRRASAKSGHRYTGTVSKVYDGDTLHVIDGDGAKHKI
CCHHHHHHHHHHCCCCCCCCCCHHHHHHCCCCCEEECCHHEEECCCEEEEEECCCCCEEE
RMAYIDAPEMKQAYGTRSRDNLRAAAEGRKVSVRVFDTDRYQREVAQVSVGKTDLNLMQV
EEEEECCHHHHHHHCCCCCCCHHHHCCCCEEEEEEECCHHHHHHHHHHHCCCCCCEEEEE
QDGAAWHYKSYAKEQQDKADFADYADAQIQAERERKGLWKAKNPQAPWAYRRAGRSGGGN
CCCCCHHHHHHHHHHHHHHHHHHHCCHHEEHHHHHCCCCCCCCCCCCHHHHHCCCCCCCC
KDWMDAVGEWLGIW
HHHHHHHHHHHCCC
>Mature Secondary Structure
MRTAVAVLDVLGAAGDAGFDAPARRRASAKSGHRYTGTVSKVYDGDTLHVIDGDGAKHKI
CCHHHHHHHHHHCCCCCCCCCCHHHHHHCCCCCEEECCHHEEECCCEEEEEECCCCCEEE
RMAYIDAPEMKQAYGTRSRDNLRAAAEGRKVSVRVFDTDRYQREVAQVSVGKTDLNLMQV
EEEEECCHHHHHHHCCCCCCCHHHHCCCCEEEEEEECCHHHHHHHHHHHCCCCCCEEEEE
QDGAAWHYKSYAKEQQDKADFADYADAQIQAERERKGLWKAKNPQAPWAYRRAGRSGGGN
CCCCCHHHHHHHHHHHHHHHHHHHCCHHEEHHHHHCCCCCCCCCCCCHHHHHCCCCCCCC
KDWMDAVGEWLGIW
HHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]