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The map label for this gene is nlpD [C]

Identifier: 161870350

GI number: 161870350

Start: 1413098

End: 1414345

Strand: Reverse

Name: nlpD [C]

Synonym: NMCC_1394

Alternate gene names: 161870350

Gene position: 1414345-1413098 (Counterclockwise)

Preceding gene: 161870351

Following gene: 161870345

Centisome position: 65.68

GC content: 57.45

Gene sequence:

>1248_bases
ATGTTGAAACAAACGACACTTTTGGCAGCTTGTACCGCCGTTGCCGCTCTGTTGGGCGGTTGCGCCACCCAACAGCCTGC
TCCTGTCATTGCAGGCAATTCAGGTATGCAGGACGCGCCGTCTTCGGCAGTTTACAACAACCCCTATGGAGCAACGCCGT
ACAGCCCGGCTCCTGCCGGCGATGCGCCTTATGTGCCGCCGGTGCAAAGCGCGCCGGTTTATACGCCTCCTGCTTATGTT
CCGCCGTCTGCACCTGCCGTTTCGGGTACATACGTTCCTTCTTACGCACCCGTCGACATCAACGCGGCGACGCATACTAT
TGTGCGCGGCGACACGGTGTACAACATTTCCAAACGCTACCATATCTCTCAAGACGATTTCCGTGCGTGGAACGGCATGA
CCGACAATACGTTGAGCATCGGTCAGATTGTTAAAGTCAAACCGGCAGGATATGCCGCACCGAAAGCCGCAGCCGTAAAA
AGCAGGCCCGCCGTACCGGCTGCCGCGCAACCGCTCGTACAGTCCGCACCCGTCGACATCAACGCGGCGACGCATACTAT
TGTGCGCGGCGACACGGTGTACAACATTTCCAAACGCTACCATATCTCTCAAGACGATTTCCGTGCGTGGAACGGCATGA
CCGACAATATGTTGAGCATCGGTCAGATTGTTAAAGTCAAACCGGCAGGATATGCCGCACCGAAAACCTCAGCCGTAGAA
AGCAGGCCCGCCGTACCGGCTGCCGTGCAAACCCCTGTGAAACCCGCCGCGCAACCGCCTGTGCAGTCCGCGCCGCAACC
TGCCGCGCCCGCTGCGGAAAATAAAGCGGTTCCCGCGCCCGCCCCGCAATCTCCTGCCGCTTCGCCTTCCGGAACGCGTT
CGGTCGGCGGCATTGTTTGGCAGCGTCCGACGCAAGGTAAAGTGGTTGCCGATTTCGGCGGCAACAACAAGGGTGTCGAT
ATTGCAGGAAATGCGGGACAACCCGTTTTGGCGGCGGCTGACGGCAAAGTGGTTTATGCCGGTTCCGGTTTGAGGGGATA
CGGAAACTTGGTCATCATCCAGCATAATTCTTCCTTCCTGACCGCATACGGGCACAACCAAAAATTACTGGTCGGCGAAG
GTCAGCAGGTCAAACGCGGTCAGCAGGTTGCCTTGATGGGCAATACCGACGCTTCTAGAACGCAGCTTCATTTCGAGGTG
CGGCAAAACGGCAAACCAGTTAATCCGAACAGCTATATCGCGTTCTGA

Upstream 100 bases:

>100_bases
TTAATCCACTATACCGTCGGGCTTTGCGCTTGAGAAGAACGCGCATTTTTATTATGATATACCGCATTCAGGCTATATAT
CGGAACATGAAGGTTATCTT

Downstream 100 bases:

>100_bases
CTTTCTGCCTGAAATCAAGTTGGAAATGCCGTCTGAAAGGTTTTCAGACGGCATTTTTGTTTTTGGCGGCTGTGTTTTCA
AATCATTCGGAAGGGACGGG

Product: lipoprotein NlpD, putative

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 415; Mature: 415

Protein sequence:

>415_residues
MLKQTTLLAACTAVAALLGGCATQQPAPVIAGNSGMQDAPSSAVYNNPYGATPYSPAPAGDAPYVPPVQSAPVYTPPAYV
PPSAPAVSGTYVPSYAPVDINAATHTIVRGDTVYNISKRYHISQDDFRAWNGMTDNTLSIGQIVKVKPAGYAAPKAAAVK
SRPAVPAAAQPLVQSAPVDINAATHTIVRGDTVYNISKRYHISQDDFRAWNGMTDNMLSIGQIVKVKPAGYAAPKTSAVE
SRPAVPAAVQTPVKPAAQPPVQSAPQPAAPAAENKAVPAPAPQSPAASPSGTRSVGGIVWQRPTQGKVVADFGGNNKGVD
IAGNAGQPVLAAADGKVVYAGSGLRGYGNLVIIQHNSSFLTAYGHNQKLLVGEGQQVKRGQQVALMGNTDASRTQLHFEV
RQNGKPVNPNSYIAF

Sequences:

>Translated_415_residues
MLKQTTLLAACTAVAALLGGCATQQPAPVIAGNSGMQDAPSSAVYNNPYGATPYSPAPAGDAPYVPPVQSAPVYTPPAYV
PPSAPAVSGTYVPSYAPVDINAATHTIVRGDTVYNISKRYHISQDDFRAWNGMTDNTLSIGQIVKVKPAGYAAPKAAAVK
SRPAVPAAAQPLVQSAPVDINAATHTIVRGDTVYNISKRYHISQDDFRAWNGMTDNMLSIGQIVKVKPAGYAAPKTSAVE
SRPAVPAAVQTPVKPAAQPPVQSAPQPAAPAAENKAVPAPAPQSPAASPSGTRSVGGIVWQRPTQGKVVADFGGNNKGVD
IAGNAGQPVLAAADGKVVYAGSGLRGYGNLVIIQHNSSFLTAYGHNQKLLVGEGQQVKRGQQVALMGNTDASRTQLHFEV
RQNGKPVNPNSYIAF
>Mature_415_residues
MLKQTTLLAACTAVAALLGGCATQQPAPVIAGNSGMQDAPSSAVYNNPYGATPYSPAPAGDAPYVPPVQSAPVYTPPAYV
PPSAPAVSGTYVPSYAPVDINAATHTIVRGDTVYNISKRYHISQDDFRAWNGMTDNTLSIGQIVKVKPAGYAAPKAAAVK
SRPAVPAAAQPLVQSAPVDINAATHTIVRGDTVYNISKRYHISQDDFRAWNGMTDNMLSIGQIVKVKPAGYAAPKTSAVE
SRPAVPAAVQTPVKPAAQPPVQSAPQPAAPAAENKAVPAPAPQSPAASPSGTRSVGGIVWQRPTQGKVVADFGGNNKGVD
IAGNAGQPVLAAADGKVVYAGSGLRGYGNLVIIQHNSSFLTAYGHNQKLLVGEGQQVKRGQQVALMGNTDASRTQLHFEV
RQNGKPVNPNSYIAF

Specific function: May Be Involved In Stationary-Phase Survival. [C]

COG id: COG0739

COG function: function code M; Membrane proteins related to metalloendopeptidases

Gene ontology:

Cell location: Cell inner membrane; Lipid-anchor (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 LysM repeat [H]

Homologues:

Organism=Escherichia coli, GI1789099, Length=261, Percent_Identity=37.9310344827586, Blast_Score=159, Evalue=5e-40,
Organism=Escherichia coli, GI87082174, Length=237, Percent_Identity=34.1772151898734, Blast_Score=139, Evalue=3e-34,
Organism=Escherichia coli, GI87081989, Length=96, Percent_Identity=48.9583333333333, Blast_Score=74, Evalue=1e-14,
Organism=Escherichia coli, GI87082297, Length=98, Percent_Identity=40.8163265306122, Blast_Score=74, Evalue=2e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011055
- InterPro:   IPR016047
- InterPro:   IPR002886
- InterPro:   IPR018392
- InterPro:   IPR002482 [H]

Pfam domain/function: PF01476 LysM; PF01551 Peptidase_M23 [H]

EC number: NA

Molecular weight: Translated: 42908; Mature: 42908

Theoretical pI: Translated: 9.91; Mature: 9.91

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
1.9 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLKQTTLLAACTAVAALLGGCATQQPAPVIAGNSGMQDAPSSAVYNNPYGATPYSPAPAG
CCCCHHHHHHHHHHHHHHCCCCCCCCCCEEECCCCCCCCCCCCEECCCCCCCCCCCCCCC
DAPYVPPVQSAPVYTPPAYVPPSAPAVSGTYVPSYAPVDINAATHTIVRGDTVYNISKRY
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCEEEEEECCEEEEECEEE
HISQDDFRAWNGMTDNTLSIGQIVKVKPAGYAAPKAAAVKSRPAVPAAAQPLVQSAPVDI
ECCCHHHHHHCCCCCCCEECCEEEEECCCCCCCCCHHHHCCCCCCCHHHHHHHHHCCCCC
NAATHTIVRGDTVYNISKRYHISQDDFRAWNGMTDNMLSIGQIVKVKPAGYAAPKTSAVE
CCCEEEEEECCEEEEECEEEECCCHHHHHHCCCCCCHHCCCEEEEECCCCCCCCCCCCCC
SRPAVPAAVQTPVKPAAQPPVQSAPQPAAPAAENKAVPAPAPQSPAASPSGTRSVGGIVW
CCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEE
QRPTQGKVVADFGGNNKGVDIAGNAGQPVLAAADGKVVYAGSGLRGYGNLVIIQHNSSFL
ECCCCCCEEEECCCCCCCEEEECCCCCCEEEECCCCEEEECCCCCCCCCEEEEEECCCEE
TAYGHNQKLLVGEGQQVKRGQQVALMGNTDASRTQLHFEVRQNGKPVNPNSYIAF
EEECCCCEEEECCCHHHCCCCEEEEEECCCCCCEEEEEEEECCCCCCCCCCEEEC
>Mature Secondary Structure
MLKQTTLLAACTAVAALLGGCATQQPAPVIAGNSGMQDAPSSAVYNNPYGATPYSPAPAG
CCCCHHHHHHHHHHHHHHCCCCCCCCCCEEECCCCCCCCCCCCEECCCCCCCCCCCCCCC
DAPYVPPVQSAPVYTPPAYVPPSAPAVSGTYVPSYAPVDINAATHTIVRGDTVYNISKRY
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCEEEEEECCEEEEECEEE
HISQDDFRAWNGMTDNTLSIGQIVKVKPAGYAAPKAAAVKSRPAVPAAAQPLVQSAPVDI
ECCCHHHHHHCCCCCCCEECCEEEEECCCCCCCCCHHHHCCCCCCCHHHHHHHHHCCCCC
NAATHTIVRGDTVYNISKRYHISQDDFRAWNGMTDNMLSIGQIVKVKPAGYAAPKTSAVE
CCCEEEEEECCEEEEECEEEECCCHHHHHHCCCCCCHHCCCEEEEECCCCCCCCCCCCCC
SRPAVPAAVQTPVKPAAQPPVQSAPQPAAPAAENKAVPAPAPQSPAASPSGTRSVGGIVW
CCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEE
QRPTQGKVVADFGGNNKGVDIAGNAGQPVLAAADGKVVYAGSGLRGYGNLVIIQHNSSFL
ECCCCCCEEEECCCCCCCEEEECCCCCCEEEECCCCEEEECCCCCCCCCEEEEEECCCEE
TAYGHNQKLLVGEGQQVKRGQQVALMGNTDASRTQLHFEVRQNGKPVNPNSYIAF
EEECCCCEEEECCCHHHCCCCEEEEEECCCCCCEEEEEEEECCCCCCCCCCEEEC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 7959068; 10984043 [H]