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The map label for this gene is ppdD [C]

Identifier: 161869823

GI number: 161869823

Start: 855655

End: 856128

Strand: Direct

Name: ppdD [C]

Synonym: NMCC_0852

Alternate gene names: 161869823

Gene position: 855655-856128 (Clockwise)

Preceding gene: 161869822

Following gene: 161869824

Centisome position: 39.73

GC content: 42.62

Gene sequence:

>474_bases
ATGGAACAAAAAGGGTTTACATTGATTGAGATGATGATAGTCGTCGCGATACTCGGCATCATCAGCGTCATTGCCATACC
TTCTTATCAAAGTTATATTGAAAAAGGCTATCAGTCCCAGCTTTATACGGAGATGGTCGGTATCAACAATATTTCCAAAC
AGTTTATTTTGAAAAATCCCCTGGACGATAATCAGACCATCAAGAGCAAACTGGAAATATTTGTCTCAGGCTATAAGATG
AATCCGAAAATTGCCGAAAAATATAATGTTTCGGTGCATTTTGTCAATAAGGAAAAACCAAGGGCATACAGCTTGGTCGG
CGTTCCAAAGACGGGGACGGGTTATACTTTGTCGGTATGGATGAACAGCGTGGGCGACGGATACAAATGCCGTGATGCCG
CTTCTGCCCAGACCTATTCGGAGACCTTGTCCGCAGATAGCGGCTGTGAAGCTTTCTCTAATCGTAAAAAATAG

Upstream 100 bases:

>100_bases
GGAGAAAATGTTTATCGGGTTACTGCCAAGGCTTGGGGTAAGAATGCCAATACCGTGGTCGTCCTTCAATCTTATGTAAG
CAATAATGATGAGTAATAAA

Downstream 100 bases:

>100_bases
GGCTGTTTTGCCAATACCGTCTGAAAATCAATGTTCAGACGGCATTTTTATGGGTATAGTGGATTAACAAAAATCAGGAC
AAGGCGACGAAGCCGCAGAC

Product: type IV pilus assembly protein

Products: NA

Alternate protein names: Prepilin-Type N- Cleavage/Methylation Domain Protein; Methylation

Number of amino acids: Translated: 157; Mature: 157

Protein sequence:

>157_residues
MEQKGFTLIEMMIVVAILGIISVIAIPSYQSYIEKGYQSQLYTEMVGINNISKQFILKNPLDDNQTIKSKLEIFVSGYKM
NPKIAEKYNVSVHFVNKEKPRAYSLVGVPKTGTGYTLSVWMNSVGDGYKCRDAASAQTYSETLSADSGCEAFSNRKK

Sequences:

>Translated_157_residues
MEQKGFTLIEMMIVVAILGIISVIAIPSYQSYIEKGYQSQLYTEMVGINNISKQFILKNPLDDNQTIKSKLEIFVSGYKM
NPKIAEKYNVSVHFVNKEKPRAYSLVGVPKTGTGYTLSVWMNSVGDGYKCRDAASAQTYSETLSADSGCEAFSNRKK
>Mature_157_residues
MEQKGFTLIEMMIVVAILGIISVIAIPSYQSYIEKGYQSQLYTEMVGINNISKQFILKNPLDDNQTIKSKLEIFVSGYKM
NPKIAEKYNVSVHFVNKEKPRAYSLVGVPKTGTGYTLSVWMNSVGDGYKCRDAASAQTYSETLSADSGCEAFSNRKK

Specific function: Not Yet Known. [C]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 17502; Mature: 17502

Theoretical pI: Translated: 9.21; Mature: 9.21

Prosite motif: PS00409 PROKAR_NTER_METHYL

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
3.8 %Met     (Translated Protein)
5.1 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
3.8 %Met     (Mature Protein)
5.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEQKGFTLIEMMIVVAILGIISVIAIPSYQSYIEKGYQSQLYTEMVGINNISKQFILKNP
CCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHEECCC
LDDNQTIKSKLEIFVSGYKMNPKIAEKYNVSVHFVNKEKPRAYSLVGVPKTGTGYTLSVW
CCCCHHHHHHHHHHHCCCCCCCCHHHEECEEEEEECCCCCCEEEEEECCCCCCCEEEEEE
MNSVGDGYKCRDAASAQTYSETLSADSGCEAFSNRKK
EHHCCCCCCCCCCCCHHHHHHHHCCCCCCHHHCCCCC
>Mature Secondary Structure
MEQKGFTLIEMMIVVAILGIISVIAIPSYQSYIEKGYQSQLYTEMVGINNISKQFILKNP
CCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHEECCC
LDDNQTIKSKLEIFVSGYKMNPKIAEKYNVSVHFVNKEKPRAYSLVGVPKTGTGYTLSVW
CCCCHHHHHHHHHHHCCCCCCCCHHHEECEEEEEECCCCCCEEEEEECCCCCCCEEEEEE
MNSVGDGYKCRDAASAQTYSETLSADSGCEAFSNRKK
EHHCCCCCCCCCCCCHHHHHHHHCCCCCCHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA