Click here to switch to the map view.

The map label for this gene is yocS [H]

Identifier: 161869646

GI number: 161869646

Start: 678396

End: 679343

Strand: Reverse

Name: yocS [H]

Synonym: NMCC_0663

Alternate gene names: 161869646

Gene position: 679343-678396 (Counterclockwise)

Preceding gene: 161869647

Following gene: 161869645

Centisome position: 31.55

GC content: 54.32

Gene sequence:

>948_bases
ATGAATATCCTCAGTAAAATCAGCAGCTTTATCGGAAAAACATTTTCCCTCTGGGCCGCGCTCTTTGCCGCCGCCGCTTT
TTTCGCGCCCGACACCTTCAAATGGGCGGGGCCTTATATTCCTTGGCTGTTGGGCATTATTATGTTCGGTATGGGTTTGA
CGCTCAAACCTTCCGACTTCGATATTTTGTTCAAACATCCCAAAGTCGTCATCATCGGCGTAATCGCACAATTCGCCATT
ATGCCGGCAACCGCCTGGCTGCTGTCCAAACTGTTGAACCTGCCTGCCGAAATCGCGGTCGGCGTGATTTTGGTCGGCTG
CTGCCCGGGCGGTACGGCTTCCAATGTGATGACCTATCTGGCGCGTGGCAATGTGGCTTTGTCGGTTGCCGTTACGTCTG
TTTCCACCCTGATTTCCCCATTGCTGACTCCCGCCATCTTCCTGATGCTTGCCGGCGAAATGCTGGAAATCCAAGCGGCC
GGTATGTTGATGTCCATCGTCAAAATGGTTTTGCTCCCCATTGTTTTGGGTTTGATTGTCCATAAGGTTTTGGGCAGTAA
AACCGAAAAGCTGACCGATGCGCTGCCGCTGGTTTCCGTTGCCGCCATCGTGCTGATTATCGGCGCGGTTGTTGGGGCAA
GCAAAGGCAAGATTATGGAAAGCGGCCTGCTGATTTTTGCGGTTGTCGTACTCCACAACGGCATCGGCTACCTGCTCGGC
TTCTTTGCCGCCAAATGGACCGGCCTGCCTTATGATGCACAAAAAACGCTGACCATCGAAGTCGGTATGCAAAACTCGGG
CCTGGCCGCCGCGCTTGCCGCCGCACACTTTGCCGCCGCGCCGGTCGTTGCCGTTCCGGGCGCATTGTTCAGCGTGTGGC
ACAATATCTCCGGCTCGCTGCTGGCAACTTATTGGGCGGCCAAAGCCGGTAAACATAAAAAACCCTAA

Upstream 100 bases:

>100_bases
CACTTTCAGACGGCATTGTTTAGGCACGGTCATTTTGCAAATTAAGGTTAAGGCGTGTATGCTTGCCTTCCCTTAAAAAC
AAACACGCAACGCATTATTT

Downstream 100 bases:

>100_bases
ACGCCTTTTATCATAATGCCGTCTGAACGGGGCAAACAAAACCGGCGGTTTCTGCCCGGTCCCTTCAGACGGCCTTTGTT
TGAAATCGGCGGGGACGATT

Product: Na+ symporter

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 315; Mature: 315

Protein sequence:

>315_residues
MNILSKISSFIGKTFSLWAALFAAAAFFAPDTFKWAGPYIPWLLGIIMFGMGLTLKPSDFDILFKHPKVVIIGVIAQFAI
MPATAWLLSKLLNLPAEIAVGVILVGCCPGGTASNVMTYLARGNVALSVAVTSVSTLISPLLTPAIFLMLAGEMLEIQAA
GMLMSIVKMVLLPIVLGLIVHKVLGSKTEKLTDALPLVSVAAIVLIIGAVVGASKGKIMESGLLIFAVVVLHNGIGYLLG
FFAAKWTGLPYDAQKTLTIEVGMQNSGLAAALAAAHFAAAPVVAVPGALFSVWHNISGSLLATYWAAKAGKHKKP

Sequences:

>Translated_315_residues
MNILSKISSFIGKTFSLWAALFAAAAFFAPDTFKWAGPYIPWLLGIIMFGMGLTLKPSDFDILFKHPKVVIIGVIAQFAI
MPATAWLLSKLLNLPAEIAVGVILVGCCPGGTASNVMTYLARGNVALSVAVTSVSTLISPLLTPAIFLMLAGEMLEIQAA
GMLMSIVKMVLLPIVLGLIVHKVLGSKTEKLTDALPLVSVAAIVLIIGAVVGASKGKIMESGLLIFAVVVLHNGIGYLLG
FFAAKWTGLPYDAQKTLTIEVGMQNSGLAAALAAAHFAAAPVVAVPGALFSVWHNISGSLLATYWAAKAGKHKKP
>Mature_315_residues
MNILSKISSFIGKTFSLWAALFAAAAFFAPDTFKWAGPYIPWLLGIIMFGMGLTLKPSDFDILFKHPKVVIIGVIAQFAI
MPATAWLLSKLLNLPAEIAVGVILVGCCPGGTASNVMTYLARGNVALSVAVTSVSTLISPLLTPAIFLMLAGEMLEIQAA
GMLMSIVKMVLLPIVLGLIVHKVLGSKTEKLTDALPLVSVAAIVLIIGAVVGASKGKIMESGLLIFAVVVLHNGIGYLLG
FFAAKWTGLPYDAQKTLTIEVGMQNSGLAAALAAAHFAAAPVVAVPGALFSVWHNISGSLLATYWAAKAGKHKKP

Specific function: Unknown

COG id: COG0385

COG function: function code R; Predicted Na+-dependent transporter

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sodium:bile acid symporter family [H]

Homologues:

Organism=Homo sapiens, GI4506973, Length=246, Percent_Identity=32.520325203252, Blast_Score=106, Evalue=3e-23,
Organism=Homo sapiens, GI4506971, Length=289, Percent_Identity=26.2975778546713, Blast_Score=86, Evalue=4e-17,
Organism=Homo sapiens, GI37537552, Length=284, Percent_Identity=24.6478873239437, Blast_Score=84, Evalue=1e-16,
Organism=Homo sapiens, GI58219066, Length=272, Percent_Identity=27.2058823529412, Blast_Score=72, Evalue=8e-13,
Organism=Homo sapiens, GI215422370, Length=220, Percent_Identity=28.1818181818182, Blast_Score=68, Evalue=1e-11,
Organism=Homo sapiens, GI9790143, Length=220, Percent_Identity=28.1818181818182, Blast_Score=68, Evalue=1e-11,
Organism=Homo sapiens, GI215422368, Length=220, Percent_Identity=28.1818181818182, Blast_Score=68, Evalue=1e-11,
Organism=Homo sapiens, GI24308414, Length=240, Percent_Identity=27.0833333333333, Blast_Score=67, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004710
- InterPro:   IPR002657 [H]

Pfam domain/function: PF01758 SBF [H]

EC number: NA

Molecular weight: Translated: 32937; Mature: 32937

Theoretical pI: Translated: 10.14; Mature: 10.14

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
3.8 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
3.8 %Met     (Mature Protein)
4.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNILSKISSFIGKTFSLWAALFAAAAFFAPDTFKWAGPYIPWLLGIIMFGMGLTLKPSDF
CCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCC
DILFKHPKVVIIGVIAQFAIMPATAWLLSKLLNLPAEIAVGVILVGCCPGGTASNVMTYL
CEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHEECCCCCCHHHHHHHH
ARGNVALSVAVTSVSTLISPLLTPAIFLMLAGEMLEIQAAGMLMSIVKMVLLPIVLGLIV
HCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
HKVLGSKTEKLTDALPLVSVAAIVLIIGAVVGASKGKIMESGLLIFAVVVLHNGIGYLLG
HHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCHHHHHH
FFAAKWTGLPYDAQKTLTIEVGMQNSGLAAALAAAHFAAAPVVAVPGALFSVWHNISGSL
HHHHHHCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCHH
LATYWAAKAGKHKKP
HHHHHHHHCCCCCCC
>Mature Secondary Structure
MNILSKISSFIGKTFSLWAALFAAAAFFAPDTFKWAGPYIPWLLGIIMFGMGLTLKPSDF
CCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCC
DILFKHPKVVIIGVIAQFAIMPATAWLLSKLLNLPAEIAVGVILVGCCPGGTASNVMTYL
CEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHEECCCCCCHHHHHHHH
ARGNVALSVAVTSVSTLISPLLTPAIFLMLAGEMLEIQAAGMLMSIVKMVLLPIVLGLIV
HCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
HKVLGSKTEKLTDALPLVSVAAIVLIIGAVVGASKGKIMESGLLIFAVVVLHNGIGYLLG
HHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCHHHHHH
FFAAKWTGLPYDAQKTLTIEVGMQNSGLAAALAAAHFAAAPVVAVPGALFSVWHNISGSL
HHHHHHCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCHH
LATYWAAKAGKHKKP
HHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]