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The map label for this gene is yrdA [H]

Identifier: 161869558

GI number: 161869558

Start: 598056

End: 598586

Strand: Direct

Name: yrdA [H]

Synonym: NMCC_0573

Alternate gene names: 161869558

Gene position: 598056-598586 (Clockwise)

Preceding gene: 161869557

Following gene: 161869576

Centisome position: 27.77

GC content: 57.25

Gene sequence:

>531_bases
ATGAACGCAATCCGAACTTTCCAAAACCGCACGCCCGAAATCCACGAAAGCTGTATGATAGACGAAGCGTGCGTCGTCAT
CGGCGAAGTGTCGCTTGCCGAAGACGTTTCCGTGTGGCCGTGCGCCGTGTTGCGCGGCGATGTGAACAGCATCACCGTCG
GCGCGCGCAGCAATATACAGGACGGCAGCGTCCTGCACGTTTCCCACAAAACCGCCGCCAAACCCGAAGGATCGCCGCTG
GTTATCGGCGAAGACGTTACCGTGGGGCACAAAGTGATGCTGCACGGCTGCCGAATCGGCAACCGCGTCTTGGTCGGTAT
GGGCAGCACCGTTTTGGACGATGCTGTGATTGAGGACGAAGTGATGATTGGCGCGGGCAGCCTCGTTCCGCCGCGTAAAC
GTTTGGAGGGTGGCTATCTTTATGTCGGTTCGCCGGTCAGACAAGTGCGCGTGCTGACCGATGAGGAAAAAGCCTTTTTG
AAATATTCCGCCGCGCATTATGTGAAGCTGTCGAAACAGTACGGGATGTGA

Upstream 100 bases:

>100_bases
ACATTATTCGGGGTCGATATTACAGGCAGGATTTTAAAAGTAATCAGAGGGAATGTTTAATAAATCCTTTAACACTATAC
ATCTTACCGAAGGAGGAAAA

Downstream 100 bases:

>100_bases
AATCACATCGGCGTTCTTGCGTCAGCCCCAAATTCATGCGGATGGGACGCATCCGATAACGGTATCCGATGCGCCTTGAT
TTTGACCGTCTGCGTTTGAG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 176; Mature: 176

Protein sequence:

>176_residues
MNAIRTFQNRTPEIHESCMIDEACVVIGEVSLAEDVSVWPCAVLRGDVNSITVGARSNIQDGSVLHVSHKTAAKPEGSPL
VIGEDVTVGHKVMLHGCRIGNRVLVGMGSTVLDDAVIEDEVMIGAGSLVPPRKRLEGGYLYVGSPVRQVRVLTDEEKAFL
KYSAAHYVKLSKQYGM

Sequences:

>Translated_176_residues
MNAIRTFQNRTPEIHESCMIDEACVVIGEVSLAEDVSVWPCAVLRGDVNSITVGARSNIQDGSVLHVSHKTAAKPEGSPL
VIGEDVTVGHKVMLHGCRIGNRVLVGMGSTVLDDAVIEDEVMIGAGSLVPPRKRLEGGYLYVGSPVRQVRVLTDEEKAFL
KYSAAHYVKLSKQYGM
>Mature_176_residues
MNAIRTFQNRTPEIHESCMIDEACVVIGEVSLAEDVSVWPCAVLRGDVNSITVGARSNIQDGSVLHVSHKTAAKPEGSPL
VIGEDVTVGHKVMLHGCRIGNRVLVGMGSTVLDDAVIEDEVMIGAGSLVPPRKRLEGGYLYVGSPVRQVRVLTDEEKAFL
KYSAAHYVKLSKQYGM

Specific function: Unknown

COG id: COG0663

COG function: function code R; Carbonic anhydrases/acetyltransferases, isoleucine patch superfamily

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the gamma-class carbonic anhydrase family [H]

Homologues:

Organism=Escherichia coli, GI87082240, Length=173, Percent_Identity=63.5838150289017, Blast_Score=242, Evalue=1e-65,
Organism=Escherichia coli, GI1787667, Length=157, Percent_Identity=38.8535031847134, Blast_Score=104, Evalue=3e-24,
Organism=Escherichia coli, GI87081681, Length=165, Percent_Identity=35.1515151515151, Blast_Score=102, Evalue=2e-23,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011004 [H]

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 19016; Mature: 19016

Theoretical pI: Translated: 6.51; Mature: 6.51

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.3 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
5.7 %Cys+Met (Translated Protein)
2.3 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
5.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNAIRTFQNRTPEIHESCMIDEACVVIGEVSLAEDVSVWPCAVLRGDVNSITVGARSNIQ
CCCCHHHHCCCCCHHHHHHHCCHHEEEECCCCCCCCCCCEEEEEECCCCEEEECCCCCCC
DGSVLHVSHKTAAKPEGSPLVIGEDVTVGHKVMLHGCRIGNRVLVGMGSTVLDDAVIEDE
CCCEEEEECCCCCCCCCCEEEEECCCCCCCEEEEEECCCCCEEEEECCCHHHHHHHCCCE
VMIGAGSLVPPRKRLEGGYLYVGSPVRQVRVLTDEEKAFLKYSAAHYVKLSKQYGM
EEEECCCCCCCHHHCCCCEEEECCCCEEEEEEECCCHHHEEHHHHHEEEEEHHCCC
>Mature Secondary Structure
MNAIRTFQNRTPEIHESCMIDEACVVIGEVSLAEDVSVWPCAVLRGDVNSITVGARSNIQ
CCCCHHHHCCCCCHHHHHHHCCHHEEEECCCCCCCCCCCEEEEEECCCCEEEECCCCCCC
DGSVLHVSHKTAAKPEGSPLVIGEDVTVGHKVMLHGCRIGNRVLVGMGSTVLDDAVIEDE
CCCEEEEECCCCCCCCCCEEEEECCCCCCCEEEEEECCCCCEEEEECCCHHHHHHHCCCE
VMIGAGSLVPPRKRLEGGYLYVGSPVRQVRVLTDEEKAFLKYSAAHYVKLSKQYGM
EEEECCCCCCCHHHCCCCEEEECCCCEEEEEEECCCHHHEEHHHHHEEEEEHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503; 10493123 [H]