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The map label for this gene is potC [H]

Identifier: 161869544

GI number: 161869544

Start: 581483

End: 582370

Strand: Direct

Name: potC [H]

Synonym: NMCC_0559

Alternate gene names: 161869544

Gene position: 581483-582370 (Clockwise)

Preceding gene: 161869543

Following gene: 161869545

Centisome position: 27.0

GC content: 50.0

Gene sequence:

>888_bases
ATGCAGAAATCCAAATTATCTTGGTTCTTGAAACTGATGTTGGCACTGTCGCTGGCGTTTCTGTATATCCCGCTGGTTGT
TTTGGTCATCTATTCGTTTAACGAATCCAAGCTGGTAACCGTTTGGGGCGGCTTTTCGACCAAGTGGTACGGCGCATTGC
TGGAAAACGACACCATCTTGGAAGCCGCTTGGCTGTCGCTGCGGATTGCCGTTGTGTCTTCGCTTGCCGCCGTCGTTTTG
GGCATGCTGGCGGGCTATGCGATGGCGCGGATTAAACGTTTTCGCGGCAGTACCTTGTTCGCCGGTATGATTTCCGCACC
TATGGTGATGCCCGACGTGATTACCGGTCTGTCTATGCTGCTGCTGATTATTCAGGTACAGATATTTTTGCAGGGCAGCG
AATGGTTACAACATCTCTACTTCGATCGTGGCTTTTTCACTATTTTCTTAGGACATACGACGCTGTGCATGGCATACATT
ACCGTTGTTATCCGTTCGCGTCTGGTTGAGCTTGACCAATCGCTCGAAGAAGCCGCAATGGATTTGGGCGCGCGTCCGCT
GAAAATCTTTTTTGTCATCACTTTGCCTTTGATTGCCCCTGCCATCGCTTCAGGCTTTCTGCTCGGCATTACCCTGTCTT
TGGATGATTTGGTGATTACCTCATTCCTCTCCGGCCCCGGTTCATCCACATTGCCGCAGGTGATTTTCTCCAAAATCAAG
CTGGGTCTTGATCCGCAGATGAACGTTTTGGCAACCATCCTGATCGGCATCATCGGAACATTGGTCATCATCGTCAATTA
TTGGATGATGAGGCAGGCAACCAAGCGTGACCGAGAAGCGGCAGAAGCCTACCGCCAAGAAAAATTGGCTGCCGAGAAAG
CAAATTAA

Upstream 100 bases:

>100_bases
TGGCTTCCGCCGTCGCCGTCGTGATGGTCGCGCTGCTGGTCGTGCCGATTGCCCTGTTTCAGCATTATGAAAACCGCGAA
TTGGAAGAAGGAGCCAAATA

Downstream 100 bases:

>100_bases
TTAATAAGGCAGGCTGACCGCATGACTGGGTCAGCCTGTTTTCTTCAACCGATTTTCTGTTTGGACGATATGGCTCGACA
GCCTGTATCATTCCGTCCGA

Product: spermidine/putrescine ABC transporter, permease protein

Products: ADP; phosphate; putrescine [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 295; Mature: 295

Protein sequence:

>295_residues
MQKSKLSWFLKLMLALSLAFLYIPLVVLVIYSFNESKLVTVWGGFSTKWYGALLENDTILEAAWLSLRIAVVSSLAAVVL
GMLAGYAMARIKRFRGSTLFAGMISAPMVMPDVITGLSMLLLIIQVQIFLQGSEWLQHLYFDRGFFTIFLGHTTLCMAYI
TVVIRSRLVELDQSLEEAAMDLGARPLKIFFVITLPLIAPAIASGFLLGITLSLDDLVITSFLSGPGSSTLPQVIFSKIK
LGLDPQMNVLATILIGIIGTLVIIVNYWMMRQATKRDREAAEAYRQEKLAAEKAN

Sequences:

>Translated_295_residues
MQKSKLSWFLKLMLALSLAFLYIPLVVLVIYSFNESKLVTVWGGFSTKWYGALLENDTILEAAWLSLRIAVVSSLAAVVL
GMLAGYAMARIKRFRGSTLFAGMISAPMVMPDVITGLSMLLLIIQVQIFLQGSEWLQHLYFDRGFFTIFLGHTTLCMAYI
TVVIRSRLVELDQSLEEAAMDLGARPLKIFFVITLPLIAPAIASGFLLGITLSLDDLVITSFLSGPGSSTLPQVIFSKIK
LGLDPQMNVLATILIGIIGTLVIIVNYWMMRQATKRDREAAEAYRQEKLAAEKAN
>Mature_295_residues
MQKSKLSWFLKLMLALSLAFLYIPLVVLVIYSFNESKLVTVWGGFSTKWYGALLENDTILEAAWLSLRIAVVSSLAAVVL
GMLAGYAMARIKRFRGSTLFAGMISAPMVMPDVITGLSMLLLIIQVQIFLQGSEWLQHLYFDRGFFTIFLGHTTLCMAYI
TVVIRSRLVELDQSLEEAAMDLGARPLKIFFVITLPLIAPAIASGFLLGITLSLDDLVITSFLSGPGSSTLPQVIFSKIK
LGLDPQMNVLATILIGIIGTLVIIVNYWMMRQATKRDREAAEAYRQEKLAAEKAN

Specific function: Required for the activity of the bacterial periplasmic transport system of putrescine [H]

COG id: COG1177

COG function: function code E; ABC-type spermidine/putrescine transport system, permease component II

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1787081, Length=274, Percent_Identity=54.3795620437956, Blast_Score=271, Evalue=3e-74,
Organism=Escherichia coli, GI1787368, Length=248, Percent_Identity=38.3064516129032, Blast_Score=172, Evalue=3e-44,
Organism=Escherichia coli, GI1787714, Length=278, Percent_Identity=29.4964028776978, Blast_Score=111, Evalue=5e-26,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 32650; Mature: 32650

Theoretical pI: Translated: 9.50; Mature: 9.50

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
4.4 %Met     (Translated Protein)
4.7 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
4.4 %Met     (Mature Protein)
4.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQKSKLSWFLKLMLALSLAFLYIPLVVLVIYSFNESKLVTVWGGFSTKWYGALLENDTIL
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHCCCHHH
EAAWLSLRIAVVSSLAAVVLGMLAGYAMARIKRFRGSTLFAGMISAPMVMPDVITGLSML
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCHHHHHHHHHHHHH
LLIIQVQIFLQGSEWLQHLYFDRGFFTIFLGHTTLCMAYITVVIRSRLVELDQSLEEAAM
HHHHHHHHHHCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
DLGARPLKIFFVITLPLIAPAIASGFLLGITLSLDDLVITSFLSGPGSSTLPQVIFSKIK
HCCCCHHHHHHHHHHHHHHHHHHHHHHHHEEHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
LGLDPQMNVLATILIGIIGTLVIIVNYWMMRQATKRDREAAEAYRQEKLAAEKAN
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MQKSKLSWFLKLMLALSLAFLYIPLVVLVIYSFNESKLVTVWGGFSTKWYGALLENDTIL
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHCCCHHH
EAAWLSLRIAVVSSLAAVVLGMLAGYAMARIKRFRGSTLFAGMISAPMVMPDVITGLSML
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCHHHHHHHHHHHHH
LLIIQVQIFLQGSEWLQHLYFDRGFFTIFLGHTTLCMAYITVVIRSRLVELDQSLEEAAM
HHHHHHHHHHCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
DLGARPLKIFFVITLPLIAPAIASGFLLGITLSLDDLVITSFLSGPGSSTLPQVIFSKIK
HCCCCHHHHHHHHHHHHHHHHHHHHHHHHEEHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
LGLDPQMNVLATILIGIIGTLVIIVNYWMMRQATKRDREAAEAYRQEKLAAEKAN
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; putrescine [Periplasm]; H2O [C]

Specific reaction: ATP + putrescine [Periplasm] + H2O = ADP + phosphate + putrescine [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 12471157 [H]