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The map label for this gene is ydhO [H]

Identifier: 161869201

GI number: 161869201

Start: 204116

End: 204826

Strand: Reverse

Name: ydhO [H]

Synonym: NMCC_0204

Alternate gene names: 161869201

Gene position: 204826-204116 (Counterclockwise)

Preceding gene: 161869203

Following gene: 161869200

Centisome position: 9.51

GC content: 61.32

Gene sequence:

>711_bases
ATGTTTGCCGTCCGCCCCGCCCTTGCCGACGAGTTGACCAACCTGCTCAGCAGCCGCGAGCAGATTCTCAGACAGTTTGC
CGAAGACGAACAGCCCGTTTTACCCATCAACCGAGCCCCCGCCCGGCGGGCGGGCAATGCCGACGAACTCATCGGCAGCG
CGATGGGGCTTAACGAACAGCCCGTTTTACCCGTCAACCGAGTCCCCGCCCGGCGGGCGGGCAATGCCGACGAACTCATC
GGCAACGCGATGGGGCTTAACGAACAGCCCGTTTTACCCGTCAACCGAGCCCCCGCCCGGCGGGCGGGCAATGCCGACGA
ACTCATCGGCAACGCGATGGGACTTTTGGGTATTGCCTACCGCTACGGCGGCACATCGGTTTCTACCGGTTTTGACTGCA
GCGGCTTCATGCAGCACATCTTCAAACGCGCCATGGGCATCAACCTGCCGCGCACGTCGGCAGAACAGGCACGGATGGGT
ACGCCGGTTGCCCGAAGCGAATTGCAGCCCGGAGATATGGTGTTTTTCCGCACGCTCGGCGGCAGCCGCATTTCCCATGT
CGGACTTTATATCGGCAACAACCGCTTCATCCACGCGCCGCGCACGGGGAAAAATATCGAAATCACCAGCCTGAGCCACA
AATATTGGAGCGGCAAATACGCGTTCGCCCGCCGGGTCAAGAAAAACGACCCGTCCCGCTTTCTGAACTGA

Upstream 100 bases:

>100_bases
TGATACAGCATAACATCGCACGGCGGCACGATGCCTCCTGCGCGGAAACACCGATATGGATTCTTTTTTCAAACCGGCAG
TTTGGGCGGTTTTGTGGCTG

Downstream 100 bases:

>100_bases
TTTCCCAAGGAATACGCAATGAGTATGCCCGAAATGCCCAAATGGTACGACGATGACGGACAGATCGTGTCCTGTACCGA
AAAGGTCAAAGTGATGTCCG

Product: outer membrane protein precursor GNA2001

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 236; Mature: 236

Protein sequence:

>236_residues
MFAVRPALADELTNLLSSREQILRQFAEDEQPVLPINRAPARRAGNADELIGSAMGLNEQPVLPVNRVPARRAGNADELI
GNAMGLNEQPVLPVNRAPARRAGNADELIGNAMGLLGIAYRYGGTSVSTGFDCSGFMQHIFKRAMGINLPRTSAEQARMG
TPVARSELQPGDMVFFRTLGGSRISHVGLYIGNNRFIHAPRTGKNIEITSLSHKYWSGKYAFARRVKKNDPSRFLN

Sequences:

>Translated_236_residues
MFAVRPALADELTNLLSSREQILRQFAEDEQPVLPINRAPARRAGNADELIGSAMGLNEQPVLPVNRVPARRAGNADELI
GNAMGLNEQPVLPVNRAPARRAGNADELIGNAMGLLGIAYRYGGTSVSTGFDCSGFMQHIFKRAMGINLPRTSAEQARMG
TPVARSELQPGDMVFFRTLGGSRISHVGLYIGNNRFIHAPRTGKNIEITSLSHKYWSGKYAFARRVKKNDPSRFLN
>Mature_236_residues
MFAVRPALADELTNLLSSREQILRQFAEDEQPVLPINRAPARRAGNADELIGSAMGLNEQPVLPVNRVPARRAGNADELI
GNAMGLNEQPVLPVNRAPARRAGNADELIGNAMGLLGIAYRYGGTSVSTGFDCSGFMQHIFKRAMGINLPRTSAEQARMG
TPVARSELQPGDMVFFRTLGGSRISHVGLYIGNNRFIHAPRTGKNIEITSLSHKYWSGKYAFARRVKKNDPSRFLN

Specific function: Unknown

COG id: COG0791

COG function: function code M; Cell wall-associated hydrolases (invasion-associated proteins)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the nlpC/p60 family [H]

Homologues:

Organism=Escherichia coli, GI1787944, Length=116, Percent_Identity=50.8620689655172, Blast_Score=125, Evalue=3e-30,
Organism=Escherichia coli, GI1788501, Length=110, Percent_Identity=49.0909090909091, Blast_Score=109, Evalue=1e-25,
Organism=Escherichia coli, GI1788001, Length=110, Percent_Identity=43.6363636363636, Blast_Score=94, Evalue=8e-21,
Organism=Escherichia coli, GI1786421, Length=113, Percent_Identity=38.0530973451327, Blast_Score=90, Evalue=1e-19,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000064 [H]

Pfam domain/function: PF00877 NLPC_P60 [H]

EC number: NA

Molecular weight: Translated: 25828; Mature: 25828

Theoretical pI: Translated: 10.86; Mature: 10.86

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFAVRPALADELTNLLSSREQILRQFAEDEQPVLPINRAPARRAGNADELIGSAMGLNEQ
CCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCC
PVLPVNRVPARRAGNADELIGNAMGLNEQPVLPVNRAPARRAGNADELIGNAMGLLGIAY
CCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHH
RYGGTSVSTGFDCSGFMQHIFKRAMGINLPRTSAEQARMGTPVARSELQPGDMVFFRTLG
HCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCHHHHHCCCCHHHHCCCCCCEEEEEECC
GSRISHVGLYIGNNRFIHAPRTGKNIEITSLSHKYWSGKYAFARRVKKNDPSRFLN
CCCEEEEEEEECCCEEEECCCCCCCEEEEECCCHHCCCHHHHHHHHHCCCHHHCCC
>Mature Secondary Structure
MFAVRPALADELTNLLSSREQILRQFAEDEQPVLPINRAPARRAGNADELIGSAMGLNEQ
CCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCC
PVLPVNRVPARRAGNADELIGNAMGLNEQPVLPVNRAPARRAGNADELIGNAMGLLGIAY
CCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHH
RYGGTSVSTGFDCSGFMQHIFKRAMGINLPRTSAEQARMGTPVARSELQPGDMVFFRTLG
HCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCHHHHHCCCCHHHHCCCCCCEEEEEECC
GSRISHVGLYIGNNRFIHAPRTGKNIEITSLSHKYWSGKYAFARRVKKNDPSRFLN
CCCEEEEEEEECCCEEEECCCCCCCEEEEECCCHHCCCHHHHHHHHHCCCHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503 [H]