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The map label for this gene is tspB

Identifier: 161869156

GI number: 161869156

Start: 153515

End: 155074

Strand: Reverse

Name: tspB

Synonym: NMCC_0151

Alternate gene names: NA

Gene position: 155074-153515 (Counterclockwise)

Preceding gene: 161869157

Following gene: 161869155

Centisome position: 7.2

GC content: 48.01

Gene sequence:

>1560_bases
TTGGCATCAGTAAATGCTCCGGGTAAATTTGATAGGGTTGAAGTTTATGATGATGGCAGATATTTAGGTATTCGAGGTTC
AGATGACAAAAGAAGAAGAATTTGGAAAGGTGTATTTGATAGAGAATCGGGAAGATATTTAACTTCAGAAGCTCAAGATT
TAAAAGTTAGGCATGTATCTACTGGAGCATCAAGTACGGGTAAAGTTAGTTCGGTTGTATCTTCATCAGTTTCCCGCGCT
GGCGTATTGGCGGGGGTCGGCAAACTTGCCCGCTTAGGCGCGAAATTAAGCACAAGGGCGGTTCCCTATGTCGGAACAGC
CCTTTTAGCCCATGACGTATACGAAACTTTCAAAGAAGACATACAGGCACGAGGCTACCAATACGACACCGAAACCGACA
AATTTGTAAAAGGCTACGAATATAGTAATTGCCTTTGGTACGAAGACGAAAGACGTATTAATAGAACCTATGGCTGCTAC
GGCGTTGACAGTTCGATTATGCGCCTTATGTCCGATTACAGCAGATTCCCCGAAGTTAAAGAATTGATGGAAAGCCAAAT
GTATAGGCTGGCACGTCCGTTTTGGAATTGGCATAAAGAAGAACTGAATAAATTAAGTTCTTTGGATTGGAATAATTTTG
TTTTAAATAGTTGCACATTTGATTGGAACGGCGGAGATTGTTCGGTCAATAAAGGTGATGATTTCAGAAATGGGGCTAAT
TTTTCCCTTATCCGCAATCCGAAATACAAAGAAGAAATGGATGCCAAAAAGCTGGAAGAGATTTTATCGTTGAAAGTCGA
TGCCAATCCCGACAAATACATAAAGGCAACCGGTTATCCCGGTTATTCCGAAAAAGTAGAAGTCGCACCCGGAACAAAAG
TGAATATGGGTCCCGTCACGGACAGGAACGGGAATCCCGTTCAGGTTGTCGCAACATTCGGCAGGGATTCGCAAGGCAAC
ACCACGGTGGATGTTCAAGTAATCCCGCGTCCCGACTTGACCCCCGGAAGCGCGGAAGCACCGAACGCACAGCCGCTGCC
CGAAGTATCGCCCGCCGAAAACCCCGCAAACAACCCGAACCCCAATGAGAACCCCGGCACGAGCCCCAATCCCGAACCCG
ACCCCGATTTGAATCCCGATGCAAATCCCGATACGGACGGACAGCCCGGCACAAGACCCGATTCCCCCGCCGTTCCGGGA
CGCACAAACGGCAGGGACGGCAAAGACGGAAAGGACGGCAAAGATGGCGGCCTTTTGTGCAAATTCTTCCCCGACATTCT
CGCTTGCGACAGGCTGCCCGAGTCCAATCCGGCAGAAGATTTAAATCTGCCGTCTGAAACCGTCAATGTAGAGTTTCAGA
AATCAGGAATCTTTCAAGATTCCGCACAGTGTCCCGCACCTGTCACTTTCACAGTGACTGTGCTTGATTCAAGCAGGCAG
TTCGCGTTCAGCTTTGAGAACGCATGTACCATAGCCGAACGGCTAAGGTACATGCTTCTCGCCCTTGCTTGGGCGGTTGC
CGCCTTTTTTTGTATCCGCACAGTATCTCGTGAAGTCTAG

Upstream 100 bases:

>100_bases
TTAATTAAATTAGATGAAGCAAAATGTTATGTTTATTATCCTAGGGCGAAATTTTTTAAAGATTATCCTATGCTTTAGTT
TTTTTGTATCTAAATTTGCA

Downstream 100 bases:

>100_bases
CAGGCGCAGCACCGCCGGGCTTCAGTAACTTGTACCAAGGCAGGGGGAGGACGTCCAGAAAGATTTGTAAAGACGGCTTT
ATCGTCTTTATAAATCTTTT

Product: TspB protein

Products: NA

Alternate protein names: Cell-Surface Protein; Cell-Surface Protein Truncated; LOW QUALITY PROTEIN TspB Protein

Number of amino acids: Translated: 519; Mature: 518

Protein sequence:

>519_residues
MASVNAPGKFDRVEVYDDGRYLGIRGSDDKRRRIWKGVFDRESGRYLTSEAQDLKVRHVSTGASSTGKVSSVVSSSVSRA
GVLAGVGKLARLGAKLSTRAVPYVGTALLAHDVYETFKEDIQARGYQYDTETDKFVKGYEYSNCLWYEDERRINRTYGCY
GVDSSIMRLMSDYSRFPEVKELMESQMYRLARPFWNWHKEELNKLSSLDWNNFVLNSCTFDWNGGDCSVNKGDDFRNGAN
FSLIRNPKYKEEMDAKKLEEILSLKVDANPDKYIKATGYPGYSEKVEVAPGTKVNMGPVTDRNGNPVQVVATFGRDSQGN
TTVDVQVIPRPDLTPGSAEAPNAQPLPEVSPAENPANNPNPNENPGTSPNPEPDPDLNPDANPDTDGQPGTRPDSPAVPG
RTNGRDGKDGKDGKDGGLLCKFFPDILACDRLPESNPAEDLNLPSETVNVEFQKSGIFQDSAQCPAPVTFTVTVLDSSRQ
FAFSFENACTIAERLRYMLLALAWAVAAFFCIRTVSREV

Sequences:

>Translated_519_residues
MASVNAPGKFDRVEVYDDGRYLGIRGSDDKRRRIWKGVFDRESGRYLTSEAQDLKVRHVSTGASSTGKVSSVVSSSVSRA
GVLAGVGKLARLGAKLSTRAVPYVGTALLAHDVYETFKEDIQARGYQYDTETDKFVKGYEYSNCLWYEDERRINRTYGCY
GVDSSIMRLMSDYSRFPEVKELMESQMYRLARPFWNWHKEELNKLSSLDWNNFVLNSCTFDWNGGDCSVNKGDDFRNGAN
FSLIRNPKYKEEMDAKKLEEILSLKVDANPDKYIKATGYPGYSEKVEVAPGTKVNMGPVTDRNGNPVQVVATFGRDSQGN
TTVDVQVIPRPDLTPGSAEAPNAQPLPEVSPAENPANNPNPNENPGTSPNPEPDPDLNPDANPDTDGQPGTRPDSPAVPG
RTNGRDGKDGKDGKDGGLLCKFFPDILACDRLPESNPAEDLNLPSETVNVEFQKSGIFQDSAQCPAPVTFTVTVLDSSRQ
FAFSFENACTIAERLRYMLLALAWAVAAFFCIRTVSREV
>Mature_518_residues
ASVNAPGKFDRVEVYDDGRYLGIRGSDDKRRRIWKGVFDRESGRYLTSEAQDLKVRHVSTGASSTGKVSSVVSSSVSRAG
VLAGVGKLARLGAKLSTRAVPYVGTALLAHDVYETFKEDIQARGYQYDTETDKFVKGYEYSNCLWYEDERRINRTYGCYG
VDSSIMRLMSDYSRFPEVKELMESQMYRLARPFWNWHKEELNKLSSLDWNNFVLNSCTFDWNGGDCSVNKGDDFRNGANF
SLIRNPKYKEEMDAKKLEEILSLKVDANPDKYIKATGYPGYSEKVEVAPGTKVNMGPVTDRNGNPVQVVATFGRDSQGNT
TVDVQVIPRPDLTPGSAEAPNAQPLPEVSPAENPANNPNPNENPGTSPNPEPDPDLNPDANPDTDGQPGTRPDSPAVPGR
TNGRDGKDGKDGKDGGLLCKFFPDILACDRLPESNPAEDLNLPSETVNVEFQKSGIFQDSAQCPAPVTFTVTVLDSSRQF
AFSFENACTIAERLRYMLLALAWAVAAFFCIRTVSREV

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 57368; Mature: 57237

Theoretical pI: Translated: 4.90; Mature: 4.90

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MASVNAPGKFDRVEVYDDGRYLGIRGSDDKRRRIWKGVFDRESGRYLTSEAQDLKVRHVS
CCCCCCCCCCCEEEEEECCEEEEEECCCHHHHHHHHHHHCCCCCCEECCCCCCEEEEEEE
TGASSTGKVSSVVSSSVSRAGVLAGVGKLARLGAKLSTRAVPYVGTALLAHDVYETFKED
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHCCCCHHHHHHHHHHHHHHHHHH
IQARGYQYDTETDKFVKGYEYSNCLWYEDERRINRTYGCYGVDSSIMRLMSDYSRFPEVK
HHHCCCCCCCCCHHHHCCCCCCCEEEECCHHHHCCCCCEECCCHHHHHHHHHHHCCHHHH
ELMESQMYRLARPFWNWHKEELNKLSSLDWNNFVLNSCTFDWNGGDCSVNKGDDFRNGAN
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECEEEECCCCEEECCCCCCCCCCCC
FSLIRNPKYKEEMDAKKLEEILSLKVDANPDKYIKATGYPGYSEKVEVAPGTKVNMGPVT
EEEEECCCHHHHHHHHHHHHHHHEECCCCCCCEEEECCCCCCCCEEEECCCCEECCCCCC
DRNGNPVQVVATFGRDSQGNTTVDVQVIPRPDLTPGSAEAPNAQPLPEVSPAENPANNPN
CCCCCEEEEEEEECCCCCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
PNENPGTSPNPEPDPDLNPDANPDTDGQPGTRPDSPAVPGRTNGRDGKDGKDGKDGGLLC
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEH
KFFPDILACDRLPESNPAEDLNLPSETVNVEFQKSGIFQDSAQCPAPVTFTVTVLDSSRQ
HHHHHHHHHHCCCCCCCCCCCCCCCHHEEEEECCCCCCCCCCCCCCCEEEEEEEECCCCC
FAFSFENACTIAERLRYMLLALAWAVAAFFCIRTVSREV
EEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
ASVNAPGKFDRVEVYDDGRYLGIRGSDDKRRRIWKGVFDRESGRYLTSEAQDLKVRHVS
CCCCCCCCCCEEEEEECCEEEEEECCCHHHHHHHHHHHCCCCCCEECCCCCCEEEEEEE
TGASSTGKVSSVVSSSVSRAGVLAGVGKLARLGAKLSTRAVPYVGTALLAHDVYETFKED
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHCCCCHHHHHHHHHHHHHHHHHH
IQARGYQYDTETDKFVKGYEYSNCLWYEDERRINRTYGCYGVDSSIMRLMSDYSRFPEVK
HHHCCCCCCCCCHHHHCCCCCCCEEEECCHHHHCCCCCEECCCHHHHHHHHHHHCCHHHH
ELMESQMYRLARPFWNWHKEELNKLSSLDWNNFVLNSCTFDWNGGDCSVNKGDDFRNGAN
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECEEEECCCCEEECCCCCCCCCCCC
FSLIRNPKYKEEMDAKKLEEILSLKVDANPDKYIKATGYPGYSEKVEVAPGTKVNMGPVT
EEEEECCCHHHHHHHHHHHHHHHEECCCCCCCEEEECCCCCCCCEEEECCCCEECCCCCC
DRNGNPVQVVATFGRDSQGNTTVDVQVIPRPDLTPGSAEAPNAQPLPEVSPAENPANNPN
CCCCCEEEEEEEECCCCCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
PNENPGTSPNPEPDPDLNPDANPDTDGQPGTRPDSPAVPGRTNGRDGKDGKDGKDGGLLC
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEH
KFFPDILACDRLPESNPAEDLNLPSETVNVEFQKSGIFQDSAQCPAPVTFTVTVLDSSRQ
HHHHHHHHHHCCCCCCCCCCCCCCCHHEEEEECCCCCCCCCCCCCCCEEEEEEEECCCCC
FAFSFENACTIAERLRYMLLALAWAVAAFFCIRTVSREV
EEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA