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The map label for this gene is ctrD [H]

Identifier: 161869093

GI number: 161869093

Start: 80240

End: 80890

Strand: Direct

Name: ctrD [H]

Synonym: NMCC_0082

Alternate gene names: 161869093

Gene position: 80240-80890 (Clockwise)

Preceding gene: 161869092

Following gene: 161869094

Centisome position: 3.73

GC content: 47.16

Gene sequence:

>651_bases
ATGATTTCAGTTGAACACGTTTCCAAACGCTATCTGACCCGCCAAGGTTGGCGGACAGTCTTGCACGATATTAGCTTCAA
AATGGAGAAGGGCGAGAAAATCGGTATTCTCGGCCGCAACGGTGCAGGTAAATCGACGCTCATCCGTTTGATCAGTGGCG
TTGAGCCGCCGACCACGGGTGAAATCAAGCGGACAATGAGTATTTCTTGGCCTTTGGCATTCTCCGGTGCGTTTCAAGGC
AGTCTGACCGGTATGGACAATTTGCGTTTCATCTGCCGGATTTACAATGTCGATATCGATTATGTGAAAGCGTTTACGGA
AGAATTTTCGGAGCTGGGGCAATATTTGTATGAGCCGGTGAAACGCTATTCTTCAGGTATGAAAGCGCGTTTGGCTTTTG
CGCTGTCGTTGGCGGTGGAGTTTGACTGTTACCTGATTGACGAAGTGATTGCAGTTGGTGACTCGCGTTTTGCCGATAAA
TGTAAGTACGAGTTGTTTGAAAAGCGCAAAGACCGTTCCATCATCTTGGTGTCGCACAGCCACAGCGCCATGAAGCAATA
TTGCGATAATGCGATGGTGCTGGAAAAAGGGCATATGTACCAGTTTGAAGATATGGACAAAGCCTACGAATATTATAATT
CGCTGCCTTAA

Upstream 100 bases:

>100_bases
TTACCTATGAAAATCCTTGGTATATCGTATTGTGCAATCTGGTGTTGTTGTTGTTTGGCTTGGCGATGGTCAGTAAATTC
AGTAAAGGAGTCGAGCCGCA

Downstream 100 bases:

>100_bases
AGCGATTGTTTTTAAATCAGGCCGTCTGAAATTTCAGACGGCCTGTCCGTTGGAATTCTATTGATGAACATTACTCAAAT
TCTTTCCCAAGAACTCTCCG

Product: capsule polysaccharide export ATP-binding protein

Products: NA

Alternate protein names: Capsular-polysaccharide-transporting ATPase [H]

Number of amino acids: Translated: 216; Mature: 216

Protein sequence:

>216_residues
MISVEHVSKRYLTRQGWRTVLHDISFKMEKGEKIGILGRNGAGKSTLIRLISGVEPPTTGEIKRTMSISWPLAFSGAFQG
SLTGMDNLRFICRIYNVDIDYVKAFTEEFSELGQYLYEPVKRYSSGMKARLAFALSLAVEFDCYLIDEVIAVGDSRFADK
CKYELFEKRKDRSIILVSHSHSAMKQYCDNAMVLEKGHMYQFEDMDKAYEYYNSLP

Sequences:

>Translated_216_residues
MISVEHVSKRYLTRQGWRTVLHDISFKMEKGEKIGILGRNGAGKSTLIRLISGVEPPTTGEIKRTMSISWPLAFSGAFQG
SLTGMDNLRFICRIYNVDIDYVKAFTEEFSELGQYLYEPVKRYSSGMKARLAFALSLAVEFDCYLIDEVIAVGDSRFADK
CKYELFEKRKDRSIILVSHSHSAMKQYCDNAMVLEKGHMYQFEDMDKAYEYYNSLP
>Mature_216_residues
MISVEHVSKRYLTRQGWRTVLHDISFKMEKGEKIGILGRNGAGKSTLIRLISGVEPPTTGEIKRTMSISWPLAFSGAFQG
SLTGMDNLRFICRIYNVDIDYVKAFTEEFSELGQYLYEPVKRYSSGMKARLAFALSLAVEFDCYLIDEVIAVGDSRFADK
CKYELFEKRKDRSIILVSHSHSAMKQYCDNAMVLEKGHMYQFEDMDKAYEYYNSLP

Specific function: Putative ATP-binding protein, and an energy-coupling component of capsule polysaccharide export apparatus [H]

COG id: COG1134

COG function: function code GM; ABC-type polysaccharide/polyol phosphate transport system, ATPase component

Gene ontology:

Cell location: Cell inner membrane; Peripheral membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transporter domain [H]

Homologues:

Organism=Homo sapiens, GI27436953, Length=189, Percent_Identity=28.5714285714286, Blast_Score=72, Evalue=3e-13,
Organism=Homo sapiens, GI27477115, Length=204, Percent_Identity=27.9411764705882, Blast_Score=70, Evalue=2e-12,
Organism=Homo sapiens, GI47078218, Length=217, Percent_Identity=26.2672811059908, Blast_Score=65, Evalue=5e-11,
Organism=Homo sapiens, GI45446740, Length=217, Percent_Identity=26.2672811059908, Blast_Score=65, Evalue=5e-11,
Organism=Escherichia coli, GI1788761, Length=230, Percent_Identity=26.9565217391304, Blast_Score=74, Evalue=5e-15,
Organism=Escherichia coli, GI1789751, Length=217, Percent_Identity=28.110599078341, Blast_Score=73, Evalue=1e-14,
Organism=Escherichia coli, GI1786398, Length=235, Percent_Identity=27.6595744680851, Blast_Score=67, Evalue=7e-13,
Organism=Escherichia coli, GI2367384, Length=157, Percent_Identity=33.1210191082803, Blast_Score=67, Evalue=8e-13,
Organism=Escherichia coli, GI1787547, Length=231, Percent_Identity=25.974025974026, Blast_Score=65, Evalue=2e-12,
Organism=Escherichia coli, GI1789873, Length=62, Percent_Identity=50, Blast_Score=60, Evalue=8e-11,
Organism=Caenorhabditis elegans, GI17510237, Length=190, Percent_Identity=26.3157894736842, Blast_Score=67, Evalue=6e-12,
Organism=Caenorhabditis elegans, GI71988343, Length=221, Percent_Identity=28.9592760180996, Blast_Score=64, Evalue=8e-11,
Organism=Drosophila melanogaster, GI28573573, Length=230, Percent_Identity=26.9565217391304, Blast_Score=79, Evalue=2e-15,
Organism=Drosophila melanogaster, GI28573571, Length=230, Percent_Identity=26.9565217391304, Blast_Score=79, Evalue=3e-15,
Organism=Drosophila melanogaster, GI62484234, Length=193, Percent_Identity=29.5336787564767, Blast_Score=69, Evalue=3e-12,
Organism=Drosophila melanogaster, GI116007184, Length=183, Percent_Identity=28.9617486338798, Blast_Score=68, Evalue=5e-12,
Organism=Drosophila melanogaster, GI221500365, Length=183, Percent_Identity=28.9617486338798, Blast_Score=68, Evalue=5e-12,
Organism=Drosophila melanogaster, GI24643672, Length=213, Percent_Identity=23.0046948356808, Blast_Score=64, Evalue=1e-10,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003439
- InterPro:   IPR017871
- InterPro:   IPR003593 [H]

Pfam domain/function: NA

EC number: =3.6.3.38 [H]

Molecular weight: Translated: 24802; Mature: 24802

Theoretical pI: Translated: 7.95; Mature: 7.95

Prosite motif: PS00211 ABC_TRANSPORTER_1 ; PS50893 ABC_TRANSPORTER_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
4.2 %Met     (Translated Protein)
6.0 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
4.2 %Met     (Mature Protein)
6.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MISVEHVSKRYLTRQGWRTVLHDISFKMEKGEKIGILGRNGAGKSTLIRLISGVEPPTTG
CCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHCCCCCCCC
EIKRTMSISWPLAFSGAFQGSLTGMDNLRFICRIYNVDIDYVKAFTEEFSELGQYLYEPV
CHHEEEEECCCEEECCCCCCCCCCHHHHEEEEHHHCCCHHHHHHHHHHHHHHHHHHHHHH
KRYSSGMKARLAFALSLAVEFDCYLIDEVIAVGDSRFADKCKYELFEKRKDRSIILVSHS
HHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCEEEEEECC
HSAMKQYCDNAMVLEKGHMYQFEDMDKAYEYYNSLP
HHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHCCC
>Mature Secondary Structure
MISVEHVSKRYLTRQGWRTVLHDISFKMEKGEKIGILGRNGAGKSTLIRLISGVEPPTTG
CCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHCCCCCCCC
EIKRTMSISWPLAFSGAFQGSLTGMDNLRFICRIYNVDIDYVKAFTEEFSELGQYLYEPV
CHHEEEEECCCEEECCCCCCCCCCHHHHEEEEHHHCCCHHHHHHHHHHHHHHHHHHHHHH
KRYSSGMKARLAFALSLAVEFDCYLIDEVIAVGDSRFADKCKYELFEKRKDRSIILVSHS
HHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCEEEEEECC
HSAMKQYCDNAMVLEKGHMYQFEDMDKAYEYYNSLP
HHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 10761919 [H]